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(-) Description

Title :  SOLUTION STRUCTURE OF THE N-TERMINAL ZINC FINGER DOMAIN OF MOUSE CELL GROWTH REGULATING NUCLEOLAR PROTEIN LYAR
 
Authors :  M. Yoneyama, N. Tochio, S. Koshiba, M. Inoue, T. Kigawa, Y. Muto, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  29 May 04  (Deposition) - 29 Nov 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Cell Growth Regulating Nucleolar Protein Lyar, Dna-Binding Protein, C2H2 Type Zinc-Finger, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Yoneyama, N. Tochio, S. Koshiba, M. Inoue, T. Kigawa, Y. Muto, S. Yokoyama
Solution Structure Of The N-Terminal Zinc Finger Domain Of Mouse Cell Growth Regulating Nucleolar Protein Lyar
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CELL GROWTH REGULATING NUCLEOLAR PROTEIN LYAR
    Chains: A
    Engineered: YES
    Expression System Plasmid: P030421-25
    Expression System Vector Type: PLASMID
    Fragment: ZINC FINGER DNA BINDING DOMAIN
    Gene: RIKEN CDNA 1700026C17
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: CELL-FREE PROTEIN SYNTHESIS

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:13 , CYS A:16 , HIS A:28 , CYS A:32BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWARECYS A:40 , CYS A:43 , HIS A:55 , CYS A:58BINDING SITE FOR RESIDUE ZN A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WJV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WJV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (1, 2)

NMR Structure (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_C2HC_LYARPS51804 Zinc finger C2HC LYAR-type profile.LYAR_MOUSE1-26
28-52		  2A:8-33
A:35-59

(-) Exons   (0, 0)

(no "Exon" information available for 1WJV)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:79
 aligned with LYAR_MOUSE | Q08288 from UniProtKB/Swiss-Prot  Length:388

    Alignment length:79
                                   1                                                                       
                                   | 3        13        23        33        43        53        63         
            LYAR_MOUSE    - -------MVFFTCNACGESVKKIQVEKHVSNCRNCECLSCIDCGKDFWGDDYKSHVKCISEGQKYGGKGYEAKTHKGDA 72
               SCOP domains d1wjva1 A:1-35                     d1wjva2 A:36-66                ------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------zf-LYAR-1wjvA01 A:38-65     -------------- Pfam domains
         Sec.struct. author .........eeee.....eee.hhhhhhhhhh....eeee....eeee.hhh........................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------ZF_C2HC_LYAR  PDB: A:8-33 -ZF_C2HC_LYAR  PDB: A:35-5-------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                  1wjv A  1 GSSGSSGMVFFTCNACGESVKKIQVEKHVSNCRNCECLSCIDCGKDFWGDDYKSHVKCISEGQKYGGKGYEAKSGPSSG 79
                                    10        20        30        40        50        60        70
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 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1WJV)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: zf-LYAR] (1)

(-) Gene Ontology  (4, 4)

NMR Structure(hide GO term definitions)
Chain A   (LYAR_MOUSE | Q08288)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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