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(-) Description

Title :  CRYSTAL STRUCTURE OF TT1426 FROM THERMUS THERMOPHILUS HB8
 
Authors :  R. Shibata, M. Kukimoto-Niino, K. Murayama, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  11 May 04  (Deposition) - 11 Nov 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Hypothetical Protein, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Kukimoto-Niino, R. Shibata, K. Murayama, H. Hamana, M. Nishimoto, Y. Bessho, T. Terada, M. Shirouzu, S. Kuramitsu, S. Yokoyama
Crystal Structure Of A Predicted Phosphoribosyltransferase (Tt1426) From Thermus Thermophilus Hb8 At 2. 01 A Resolution
Protein Sci. V. 14 823 2005
PubMed-ID: 15689504  |  Reference-DOI: 10.1110/PS.041229405
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN TT1426
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 274

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:12 , GLU A:15 , TYR A:90 , ARG A:93 , ARG A:97 , HOH A:1170BINDING SITE FOR RESIDUE MES A 2955

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WD5)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Pro A:31 -Arg A:32

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WD5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1WD5)

(-) Exons   (0, 0)

(no "Exon" information available for 1WD5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:208
 aligned with Q5SIB2_THET8 | Q5SIB2 from UniProtKB/TrEMBL  Length:208

    Alignment length:208
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200        
         Q5SIB2_THET8     1 MRFRDRRHAGALLAEALAPLGLEAPVVLGLPRGGVVVADEVARRLGGELDVVLVRKVGAPGNPEFALGAVGEGGELVLMPYALRYADQSYLEREAARQRDVLRKRAERYRRVRPKAARKGRDVVLVDDGVATGASMEAALSVVFQEGPRRVVVAVPVASPEAVERLKARAEVVALSVPQDFAAVGAYYLDFGEVTDEDVEAILLEWAG 208
               SCOP domains d1wd5a_ A: Putative phosphoribosyltransferase TT1426 (TTHA1462)                                                                                                                                                  SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains Pribosyltran-1wd5A01 A:1-157                                                                                                                                 --------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhh.eeee..eeeeee..eeeeeeeeee....eee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeee......hhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhh..eeeeee......hhhhhh......hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wd5 A   1 mRFRDRRHAGALLAEALAPLGLEAPVVLGLPRGGVVVADEVARRLGGELDVVLVRKVGAPGNPEFALGAVGEGGELVLmPYALRYADQSYLEREAARQRDVLRKRAERYRRVRPKAARKGRDVVLVDDGVATGASmEAALSVVFQEGPRRVVVAVPVASPEAVERLKARAEVVALSVPQDFAAVGAYYLDFGEVTDEDVEAILLEWAG 208
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130     | 140       150       160       170       180       190       200        
                            |                                                                            79-MSE                                                  136-MSE                                                                    
                            1-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1WD5)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: PRTase-like (59)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q5SIB2_THET8 | Q5SIB2)
molecular function
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
    GO:0009116    nucleoside metabolic process    The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine).

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