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(-) Description

Title :  TRP RNA-BINDING ATTENUATION PROTEIN IN COMPLEX WITH L-TRYPTOPHAN
 
Authors :  A. A. Antson, E. J. Dodson, P. Gollnick
Date :  03 Feb 95  (Deposition) - 03 Jun 95  (Release) - 29 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,J,K  (1x)
Biol. Unit 2:  L,M,N,O,P,Q,R,S,T,U,V  (1x)
Keywords :  Trp Operon, Bacillus Subtilis, Rna-Binding Attenuation Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. A. Antson, J. Otridge, A. M. Brzozowski, E. J. Dodson, G. G. Dodson, K. S. Wilson, T. M. Smith, M. Yang, T. Kurecki, P. Gollnick
The Structure Of Trp Rna-Binding Attenuation Protein.
Nature V. 374 693 1995
PubMed-ID: 7715723  |  Reference-DOI: 10.1038/374693A0
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRP RNA-BINDING ATTENUATION PROTEIN
    Cell Line: BG2087
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Gene: MTRB
    Expression System Plasmid: PTZMTRAB
    Expression System Strain: SG62052/PGP1-2
    Expression System Taxid: 562
    Gene: MTRB
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423

 Structural Features

(-) Chains, Units

  12345678910111213141516171819202122
Asymmetric Unit : ABCDEFGHIJKLMNOPQRSTUV
Biological Unit 1 (1x): ABCDEFGHIJK           
Biological Unit 2 (1x):            LMNOPQRSTUV

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 22)

Asymmetric Unit (1, 22)
No.NameCountTypeFull Name
1TRP22Ligand/IonTRYPTOPHAN
Biological Unit 1 (1, 11)
No.NameCountTypeFull Name
1TRP11Ligand/IonTRYPTOPHAN
Biological Unit 2 (1, 11)
No.NameCountTypeFull Name
1TRP11Ligand/IonTRYPTOPHAN

(-) Sites  (22, 22)

Asymmetric Unit (22, 22)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:23 , GLN A:47 , THR A:49 , THR A:52 , HOH A:83 , THR K:25 , ARG K:26 , GLY K:27 , ASP K:29 , THR K:30 , SER K:53BINDING SITE FOR RESIDUE TRP A 81
02AC2SOFTWARETHR A:25 , ARG A:26 , GLY A:27 , ASP A:29 , THR A:30 , SER A:53 , GLY B:23 , GLN B:47 , THR B:49 , THR B:52 , HOH B:83BINDING SITE FOR RESIDUE TRP B 81
03AC3SOFTWARETHR B:25 , ARG B:26 , GLY B:27 , ASP B:29 , THR B:30 , SER B:53 , GLY C:23 , GLN C:47 , THR C:49 , THR C:52 , HOH C:83BINDING SITE FOR RESIDUE TRP C 81
04AC4SOFTWARETHR C:25 , ARG C:26 , GLY C:27 , ASP C:29 , THR C:30 , SER C:53 , GLY D:23 , GLN D:47 , THR D:49 , THR D:52 , HOH D:82BINDING SITE FOR RESIDUE TRP D 81
05AC5SOFTWARETHR D:25 , ARG D:26 , GLY D:27 , ASP D:29 , THR D:30 , SER D:53 , GLY E:23 , GLN E:47 , THR E:49 , THR E:52 , HOH E:98BINDING SITE FOR RESIDUE TRP E 81
06AC6SOFTWARETHR E:25 , ARG E:26 , GLY E:27 , ASP E:29 , THR E:30 , SER E:53 , GLY F:23 , GLN F:47 , THR F:49 , THR F:52 , HOH F:84BINDING SITE FOR RESIDUE TRP F 81
07AC7SOFTWARETHR F:25 , ARG F:26 , GLY F:27 , ASP F:29 , THR F:30 , SER F:53 , GLY G:23 , GLN G:47 , THR G:49 , THR G:52 , HOH G:154BINDING SITE FOR RESIDUE TRP G 81
08AC8SOFTWARETHR G:25 , ARG G:26 , GLY G:27 , ASP G:29 , THR G:30 , SER G:53 , GLY H:23 , GLN H:47 , THR H:49 , THR H:52 , HOH H:82BINDING SITE FOR RESIDUE TRP H 81
09AC9SOFTWARETHR H:25 , ARG H:26 , GLY H:27 , ASP H:29 , THR H:30 , SER H:53 , GLY I:23 , GLN I:47 , THR I:49 , THR I:52 , HOH I:83 , HOH I:177BINDING SITE FOR RESIDUE TRP I 81
10BC1SOFTWARETHR I:25 , ARG I:26 , GLY I:27 , ASP I:29 , THR I:30 , SER I:53 , GLY J:23 , GLN J:47 , THR J:49 , THR J:52 , HOH J:82BINDING SITE FOR RESIDUE TRP J 81
11BC2SOFTWARETHR J:25 , ARG J:26 , GLY J:27 , ASP J:29 , THR J:30 , SER J:53 , GLY K:23 , GLN K:47 , THR K:49 , THR K:52 , HOH K:82BINDING SITE FOR RESIDUE TRP K 81
12BC3SOFTWAREGLY L:23 , GLN L:47 , THR L:49 , THR L:52 , HOH L:82 , THR V:25 , ARG V:26 , GLY V:27 , ASP V:29 , THR V:30 , SER V:53BINDING SITE FOR RESIDUE TRP L 81
13BC4SOFTWARETHR L:25 , ARG L:26 , GLY L:27 , ASP L:29 , THR L:30 , SER L:53 , GLY M:23 , GLN M:47 , THR M:49 , THR M:52 , HOH M:83BINDING SITE FOR RESIDUE TRP M 81
14BC5SOFTWARETHR M:25 , ARG M:26 , GLY M:27 , ASP M:29 , THR M:30 , SER M:53 , GLY N:23 , GLN N:47 , THR N:49 , THR N:52 , HOH N:83BINDING SITE FOR RESIDUE TRP N 81
15BC6SOFTWARETHR N:25 , ARG N:26 , GLY N:27 , ASP N:29 , THR N:30 , SER N:53 , GLY O:23 , GLN O:47 , THR O:49 , THR O:52 , HOH O:82BINDING SITE FOR RESIDUE TRP O 81
16BC7SOFTWARETHR O:25 , ARG O:26 , GLY O:27 , ASP O:29 , THR O:30 , SER O:53 , GLY P:23 , GLN P:47 , THR P:49 , THR P:52 , HOH P:83BINDING SITE FOR RESIDUE TRP P 81
17BC8SOFTWARETHR P:25 , ARG P:26 , GLY P:27 , ASP P:29 , THR P:30 , SER P:53 , GLY Q:23 , GLN Q:47 , THR Q:49 , THR Q:52 , HOH Q:141BINDING SITE FOR RESIDUE TRP Q 81
18BC9SOFTWARETHR Q:25 , ARG Q:26 , GLY Q:27 , ASP Q:29 , THR Q:30 , SER Q:53 , GLY R:23 , GLN R:47 , THR R:49 , GLU R:50 , THR R:52 , HOH R:170BINDING SITE FOR RESIDUE TRP R 81
19CC1SOFTWARETHR R:25 , ARG R:26 , GLY R:27 , ASP R:29 , THR R:30 , SER R:53 , GLY S:23 , GLN S:47 , THR S:49 , THR S:52 , HOH S:88BINDING SITE FOR RESIDUE TRP S 81
20CC2SOFTWARETHR S:25 , ARG S:26 , GLY S:27 , ASP S:29 , THR S:30 , SER S:53 , GLY T:23 , GLN T:47 , THR T:49 , THR T:52 , HOH T:82BINDING SITE FOR RESIDUE TRP T 81
21CC3SOFTWARETHR T:25 , ARG T:26 , GLY T:27 , ASP T:29 , THR T:30 , SER T:53 , GLY U:23 , GLN U:47 , THR U:49 , GLU U:50 , THR U:52BINDING SITE FOR RESIDUE TRP U 81
22CC4SOFTWARETHR U:25 , ARG U:26 , GLY U:27 , ASP U:29 , THR U:30 , SER U:53 , GLY V:23 , GLN V:47 , THR V:49 , HIS V:51 , THR V:52 , HOH V:82BINDING SITE FOR RESIDUE TRP V 81

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WAP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WAP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WAP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1WAP)

(-) Exons   (0, 0)

(no "Exon" information available for 1WAP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:68
 aligned with MTRB_BACSU | P19466 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:68
                                    17        27        37        47        57        67        
            MTRB_BACSU    8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEKK 75
               SCOP domains d1wapa_ A: Trp RNA-binding attenuation protein (TRAP)                SCOP domains
               CATH domains 1wapA00 A:8-75  [code=2.60.40.50, no name defined]                   CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  1wap A  8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEKK 75
                                    17        27        37        47        57        67        


Chain B from PDB  Type:PROTEIN  Length:67
 aligned with MTRB_BACSU | P19466 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:67
                                    17        27        37        47        57        67       
            MTRB_BACSU    8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
               SCOP domains d1wapb_ B: Trp RNA-binding attenuation protein (TRAP)               SCOP domains
               CATH domains 1wapB00 B:8-74  [code=2.60.40.50, no name defined]                  CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1wap B  8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
                                    17        27        37        47        57        67       


Chain C from PDB  Type:PROTEIN  Length:67
 aligned with MTRB_BACSU | P19466 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:67
                                    17        27        37        47        57        67       
            MTRB_BACSU    8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
               SCOP domains d1wapc_ C: Trp RNA-binding attenuation protein (TRAP)               SCOP domains
               CATH domains 1wapC00 C:8-74  [code=2.60.40.50, no name defined]                  CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1wap C  8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
                                    17        27        37        47        57        67       


Chain D from PDB  Type:PROTEIN  Length:67
 aligned with MTRB_BACSU | P19466 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:67
                                    17        27        37        47        57        67       
            MTRB_BACSU    8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
               SCOP domains d1wapd_ D: Trp RNA-binding attenuation protein (TRAP)               SCOP domains
               CATH domains 1wapD00 D:8-74  [code=2.60.40.50, no name defined]                  CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1wap D  8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
                                    17        27        37        47        57        67       


Chain E from PDB  Type:PROTEIN  Length:67
 aligned with MTRB_BACSU | P19466 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:67
                                    17        27        37        47        57        67       
            MTRB_BACSU    8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
               SCOP domains d1wape_ E: Trp RNA-binding attenuation protein (TRAP)               SCOP domains
               CATH domains 1wapE00 E:8-74  [code=2.60.40.50, no name defined]                  CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1wap E  8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
                                    17        27        37        47        57        67       


Chain F from PDB  Type:PROTEIN  Length:68
 aligned with MTRB_BACSU | P19466 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:68
                                    17        27        37        47        57        67        
            MTRB_BACSU    8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEKK 75
               SCOP domains d1wapf_ F: Trp RNA-binding attenuation protein (TRAP)                SCOP domains
               CATH domains 1wapF00 F:8-75  [code=2.60.40.50, no name defined]                   CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  1wap F  8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEKK 75
                                    17        27        37        47        57        67        


Chain G from PDB  Type:PROTEIN  Length:67
 aligned with MTRB_BACSU | P19466 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:67
                                    17        27        37        47        57        67       
            MTRB_BACSU    8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
               SCOP domains d1wapg_ G: Trp RNA-binding attenuation protein (TRAP)               SCOP domains
               CATH domains 1wapG00 G:8-74  [code=2.60.40.50, no name defined]                  CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1wap G  8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
                                    17        27        37        47        57        67       


Chain H from PDB  Type:PROTEIN  Length:67
 aligned with MTRB_BACSU | P19466 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:67
                                    17        27        37        47        57        67       
            MTRB_BACSU    8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
               SCOP domains d1waph_ H: Trp RNA-binding attenuation protein (TRAP)               SCOP domains
               CATH domains 1wapH00 H:8-74  [code=2.60.40.50, no name defined]                  CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1wap H  8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
                                    17        27        37        47        57        67       


Chain I from PDB  Type:PROTEIN  Length:68
 aligned with MTRB_BACSU | P19466 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:68
                                    17        27        37        47        57        67        
            MTRB_BACSU    8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEKK 75
               SCOP domains d1wapi_ I: Trp RNA-binding attenuation protein (TRAP)                SCOP domains
               CATH domains 1wapI00 I:8-75  [code=2.60.40.50, no name defined]                   CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  1wap I  8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEKK 75
                                    17        27        37        47        57        67        


Chain J from PDB  Type:PROTEIN  Length:67
 aligned with MTRB_BACSU | P19466 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:67
                                    17        27        37        47        57        67       
            MTRB_BACSU    8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
               SCOP domains d1wapj_ J: Trp RNA-binding attenuation protein (TRAP)               SCOP domains
               CATH domains 1wapJ00 J:8-74  [code=2.60.40.50, no name defined]                  CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1wap J  8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
                                    17        27        37        47        57        67       


Chain K from PDB  Type:PROTEIN  Length:67
 aligned with MTRB_BACSU | P19466 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:67
                                    17        27        37        47        57        67       
            MTRB_BACSU    8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
               SCOP domains d1wapk_ K: Trp RNA-binding attenuation protein (TRAP)               SCOP domains
               CATH domains 1wapK00 K:8-74  [code=2.60.40.50, no name defined]                  CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1wap K  8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
                                    17        27        37        47        57        67       


Chain L from PDB  Type:PROTEIN  Length:67
 aligned with MTRB_BACSU | P19466 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:67
                                    17        27        37        47        57        67       
            MTRB_BACSU    8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
               SCOP domains d1wapl_ L: Trp RNA-binding attenuation protein (TRAP)               SCOP domains
               CATH domains 1wapL00 L:8-74  [code=2.60.40.50, no name defined]                  CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1wap L  8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
                                    17        27        37        47        57        67       


Chain M from PDB  Type:PROTEIN  Length:68
 aligned with MTRB_BACSU | P19466 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:68
                                    17        27        37        47        57        67        
            MTRB_BACSU    8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEKK 75
               SCOP domains d1wapm_ M: Trp RNA-binding attenuation protein (TRAP)                SCOP domains
               CATH domains 1wapM00 M:8-75  [code=2.60.40.50, no name defined]                   CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  1wap M  8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEKK 75
                                    17        27        37        47        57        67        


Chain N from PDB  Type:PROTEIN  Length:67
 aligned with MTRB_BACSU | P19466 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:67
                                    17        27        37        47        57        67       
            MTRB_BACSU    8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
               SCOP domains d1wapn_ N: Trp RNA-binding attenuation protein (TRAP)               SCOP domains
               CATH domains 1wapN00 N:8-74  [code=2.60.40.50, no name defined]                  CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1wap N  8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
                                    17        27        37        47        57        67       


Chain O from PDB  Type:PROTEIN  Length:67
 aligned with MTRB_BACSU | P19466 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:67
                                    17        27        37        47        57        67       
            MTRB_BACSU    8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
               SCOP domains d1wapo_ O: Trp RNA-binding attenuation protein (TRAP)               SCOP domains
               CATH domains 1wapO00 O:8-74  [code=2.60.40.50, no name defined]                  CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1wap O  8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
                                    17        27        37        47        57        67       


Chain P from PDB  Type:PROTEIN  Length:68
 aligned with MTRB_BACSU | P19466 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:68
                                    17        27        37        47        57        67        
            MTRB_BACSU    8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEKK 75
               SCOP domains d1wapp_ P: Trp RNA-binding attenuation protein (TRAP)                SCOP domains
               CATH domains 1wapP00 P:8-75  [code=2.60.40.50, no name defined]                   CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  1wap P  8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEKK 75
                                    17        27        37        47        57        67        


Chain Q from PDB  Type:PROTEIN  Length:67
 aligned with MTRB_BACSU | P19466 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:67
                                    17        27        37        47        57        67       
            MTRB_BACSU    8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
               SCOP domains d1wapq_ Q: Trp RNA-binding attenuation protein (TRAP)               SCOP domains
               CATH domains 1wapQ00 Q:8-74  [code=2.60.40.50, no name defined]                  CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1wap Q  8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
                                    17        27        37        47        57        67       


Chain R from PDB  Type:PROTEIN  Length:67
 aligned with MTRB_BACSU | P19466 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:67
                                    17        27        37        47        57        67       
            MTRB_BACSU    8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
               SCOP domains d1wapr_ R: Trp RNA-binding attenuation protein (TRAP)               SCOP domains
               CATH domains 1wapR00 R:8-74  [code=2.60.40.50, no name defined]                  CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1wap R  8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
                                    17        27        37        47        57        67       


Chain S from PDB  Type:PROTEIN  Length:68
 aligned with MTRB_BACSU | P19466 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:68
                                    17        27        37        47        57        67        
            MTRB_BACSU    8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEKK 75
               SCOP domains d1waps_ S: Trp RNA-binding attenuation protein (TRAP)                SCOP domains
               CATH domains 1wapS00 S:8-75  [code=2.60.40.50, no name defined]                   CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  1wap S  8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEKK 75
                                    17        27        37        47        57        67        


Chain T from PDB  Type:PROTEIN  Length:67
 aligned with MTRB_BACSU | P19466 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:67
                                    17        27        37        47        57        67       
            MTRB_BACSU    8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
               SCOP domains d1wapt_ T: Trp RNA-binding attenuation protein (TRAP)               SCOP domains
               CATH domains 1wapT00 T:8-74  [code=2.60.40.50, no name defined]                  CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1wap T  8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
                                    17        27        37        47        57        67       


Chain U from PDB  Type:PROTEIN  Length:67
 aligned with MTRB_BACSU | P19466 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:67
                                    17        27        37        47        57        67       
            MTRB_BACSU    8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
               SCOP domains d1wapu_ U: Trp RNA-binding attenuation protein (TRAP)               SCOP domains
               CATH domains 1wapU00 U:8-74  [code=2.60.40.50, no name defined]                  CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1wap U  8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
                                    17        27        37        47        57        67       


Chain V from PDB  Type:PROTEIN  Length:67
 aligned with MTRB_BACSU | P19466 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:67
                                    17        27        37        47        57        67       
            MTRB_BACSU    8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
               SCOP domains d1wapv_ V: Trp RNA-binding attenuation protein (TRAP)               SCOP domains
               CATH domains 1wapV00 V:8-74  [code=2.60.40.50, no name defined]                  CATH domains
           Pfam domains (1) TrpBP-1wapV01 V:8-74                                                Pfam domains (1)
           Pfam domains (2) TrpBP-1wapV02 V:8-74                                                Pfam domains (2)
           Pfam domains (3) TrpBP-1wapV03 V:8-74                                                Pfam domains (3)
           Pfam domains (4) TrpBP-1wapV04 V:8-74                                                Pfam domains (4)
           Pfam domains (5) TrpBP-1wapV05 V:8-74                                                Pfam domains (5)
           Pfam domains (6) TrpBP-1wapV06 V:8-74                                                Pfam domains (6)
           Pfam domains (7) TrpBP-1wapV07 V:8-74                                                Pfam domains (7)
           Pfam domains (8) TrpBP-1wapV08 V:8-74                                                Pfam domains (8)
           Pfam domains (9) TrpBP-1wapV09 V:8-74                                                Pfam domains (9)
          Pfam domains (10) TrpBP-1wapV10 V:8-74                                                Pfam domains (10)
          Pfam domains (11) TrpBP-1wapV11 V:8-74                                                Pfam domains (11)
          Pfam domains (12) TrpBP-1wapV12 V:8-74                                                Pfam domains (12)
          Pfam domains (13) TrpBP-1wapV13 V:8-74                                                Pfam domains (13)
          Pfam domains (14) TrpBP-1wapV14 V:8-74                                                Pfam domains (14)
          Pfam domains (15) TrpBP-1wapV15 V:8-74                                                Pfam domains (15)
          Pfam domains (16) TrpBP-1wapV16 V:8-74                                                Pfam domains (16)
          Pfam domains (17) TrpBP-1wapV17 V:8-74                                                Pfam domains (17)
          Pfam domains (18) TrpBP-1wapV18 V:8-74                                                Pfam domains (18)
          Pfam domains (19) TrpBP-1wapV19 V:8-74                                                Pfam domains (19)
          Pfam domains (20) TrpBP-1wapV20 V:8-74                                                Pfam domains (20)
          Pfam domains (21) TrpBP-1wapV21 V:8-74                                                Pfam domains (21)
          Pfam domains (22) TrpBP-1wapV22 V:8-74                                                Pfam domains (22)
         Sec.struct. author .eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1wap V  8 DFVVIKAVEDGVNVIGLTRGTDTKFHHSEKLDKGEVIIAQFTEHTSAIKVRGEALIQTAYGEMKSEK 74
                                    17        27        37        47        57        67
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 22)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 22)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Sandwich (5577)
(-)
Topology: Immunoglobulin-like (3897)
(-)
Homologous Superfamily: [code=2.60.40.50, no name defined] (14)
(-)
Bacillus subtilis. Organism_taxid: 1423. Cell_line: bg2087. (1)
1a1wapA00A:8-75
1b1wapF00F:8-75
1c1wapG00G:8-74
1d1wapH00H:8-74
1e1wapJ00J:8-74
1f1wapK00K:8-74
1g1wapL00L:8-74
1h1wapN00N:8-74
1i1wapO00O:8-74
1j1wapQ00Q:8-74
1k1wapR00R:8-74
1l1wapT00T:8-74
1m1wapI00I:8-75
1n1wapU00U:8-74
1o1wapV00V:8-74
1p1wapM00M:8-75
1q1wapP00P:8-75
1r1wapS00S:8-75
1s1wapB00B:8-74
1t1wapC00C:8-74
1u1wapD00D:8-74
1v1wapE00E:8-74

(-) Pfam Domains  (1, 22)

Asymmetric Unit
(-)
Clan: no clan defined [family: TrpBP] (7)
(-)
Family: TrpBP (7)
(-)
Bacillus subtilis (1)
1aTrpBP-1wapV01V:8-74
1bTrpBP-1wapV02V:8-74
1cTrpBP-1wapV03V:8-74
1dTrpBP-1wapV04V:8-74
1eTrpBP-1wapV05V:8-74
1fTrpBP-1wapV06V:8-74
1gTrpBP-1wapV07V:8-74
1hTrpBP-1wapV08V:8-74
1iTrpBP-1wapV09V:8-74
1jTrpBP-1wapV10V:8-74
1kTrpBP-1wapV11V:8-74
1lTrpBP-1wapV12V:8-74
1mTrpBP-1wapV13V:8-74
1nTrpBP-1wapV14V:8-74
1oTrpBP-1wapV15V:8-74
1pTrpBP-1wapV16V:8-74
1qTrpBP-1wapV17V:8-74
1rTrpBP-1wapV18V:8-74
1sTrpBP-1wapV19V:8-74
1tTrpBP-1wapV20V:8-74
1uTrpBP-1wapV21V:8-74
1vTrpBP-1wapV22V:8-74

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V   (MTRB_BACSU | P19466)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
biological process
    GO:0006353    DNA-templated transcription, termination    The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MTRB_BACSU | P19466: 3zzq 4b27

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1WAP)