1W97 - JenaLib

Title :   CYTO-EPSL: THE CYTOPLASMIC DOMAIN OF EPSL, AN INNER MEMBRANE COMPONENT OF THE TYPE II SECRETION SYSTEM OF VIBRIO CHOLERAE

Authors :   J. Abendroth, M. Bagdasarian, M. Sansdkvist, W. G. J. Hol

Date :   06 Oct 04 (Deposition) - 30 Nov 04 (Release) - 06 Mar 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym./Biol. Unit : L

Keywords :   Type Ii Secretion, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Abendroth, M. Bagdasarian, M. Sandkvist, W. G. J. Hol
The Structure Of The Cytoplasmic Domain Of Epsl, An Inner Membrane Component Of The Type Ii Secretion System Of Vibrio Cholerae: An Unusual Member Of The Actin-Like Atpase Superfamily
J. Mol. Biol. V. 344 619 2004
PubMed-ID: 15533433 | Reference-DOI: 10.1016/J.JMB.2004.09.062

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 3)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain L from PDB  Type:PROTEIN  Length:230
 aligned with GSPL_VIBCH | P45782 from UniProtKB/Swiss-Prot  Length:407

    Alignment length:239
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235         
           GSPL_VIBCH     6 SEFLTVRLSSQKEADIPWLVWSAEQQEVIASGQVAGWEALHEIESYADQRSVVVLLAASDLILTSVEIPPGASRQLENMLPYLLEDEIAQDVEDVHFCVLSKGRETADVVGVDRLWLRACLDHLKACGFDVKRVLPDVLAIPRPEHGLAALQLGDEWLVRKSTTQGMAVDAQWLSLLAASDWVQNEGEYLPLQALTPLPELSLAETQEWRYEPSGLVMQLLTQEALTSKFNLLTGSFKL 244
               SCOP domains d1w97l1 L:2-145 Cytoplasmic domain of general secretion pathway pro       tein L, EpsL                                                          d1w97l2 L:146-239 Cytoplasmic domain of general secretion pathway protein L, EpsL             - SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---T2SL-1w97L01 L:5-240                                                                                                                                                                                                                         Pfam domains
         Sec.struct. author .eeeeeee......eeeeeeee....eeeeeeeee.hhhhhhhhhhhh..eeeeee.hhhheeeee.-------............--......eeeee.......eeeeeeehhhhhhhhhhh.....eeeeeee.hhhh......eeeeee..eeeee.....eeeee..hhhhhh.....ee..ee..eee.....................hhhhhhhhhhhh......hhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1w97 L   2 SEFLTVRLSSQKEADIPWLVWSAEQQEVIASGQVAGWEALHEIESYADQRSVVVLLAASDLILTSVE-------QLENmLPYLLED--AQDVEDVHFCVLSKGRETADVVGVDRLWLRACLDHLKACGFDVKRVLPDVLAIPRPEHGLAALQLGDEWLVRKSTTQGmAVDAQWLSLLAASDWVQNEGEYLPLQALTPLPELSLAETQEWRYEPSGLVmQLLTQEALTSKFNLLTGSFKL 240
                                    11        21        31        41        51        61      |  -    |   81     |  91       101       111       121       131       141       151       161      |171       181       191       201       211       221       231         
                                                                                             68      76   |     87 90                                                                           168-MSE                                            219-MSE                 
                                                                                                         80-MSE

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	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

Chain L (GSPL_VIBCH | P45782)

molecular function
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0008565	protein transporter activity	Enables the directed movement of proteins into, out of or within a cell, or between cells.
biological process
	GO:0009306	protein secretion	The controlled release of proteins from a cell.
	GO:0015031	protein transport	The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0009276	Gram-negative-bacterium-type cell wall	The peptidoglycan layer of the Gram-negative cell envelope. In Gram-negative cells the peptidoglycan is relatively thin (1-2nm) and is linked to the outer membrane by lipoproteins. In Gram-negative cells the peptidoglycan is too thin to retain the primary stain in the Gram staining procedure and therefore cells appear red after Gram stain.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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