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(-) Description

Title :  CRYSTAL STRUCTURE OF MYOSIN V MOTOR DOMAIN - NUCLEOTIDE-FREE
 
Authors :  P. -D. Coureux, H. L. Sweeney, A. Houdusse
Date :  22 Sep 04  (Deposition) - 22 Feb 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Motor Protein, Unconventional Myosin, Myosin V, Chicken, Molecular Motor, Atpase, Elc, Iq Motif, Muscle Protein, Atp-Binding Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. -D. Coureux, H. L. Sweeney, A. Houdusse
Three Myosin V Structures Delineate Essential Features Of Chemo-Mechanical Transduction
Embo J. V. 23 4527 2004
PubMed-ID: 15510214  |  Reference-DOI: 10.1038/SJ.EMBOJ.7600458

(-) Compounds

Molecule 1 - MYOSIN VA
    Chains: A, B, C, D
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: MOTOR DOMAIN, RESIDUES 1-766
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031
    Synonym: MYOSIN 5A, MYOSIN-V, MYOSIN HEAVY CHAIN P190

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:166 , ALA A:167 , GLY A:168 , THR A:170BINDING SITE FOR RESIDUE SO4 A1767
2AC2SOFTWAREGLY B:166 , GLY B:168 , LYS B:169 , THR B:170 , VAL B:171BINDING SITE FOR RESIDUE SO4 B1764
3AC3SOFTWAREGLY D:166 , ALA D:167 , GLY D:168 , LYS D:169 , THR D:170 , VAL D:171BINDING SITE FOR RESIDUE SO4 D1767

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1W8J)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1W8J)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1W8J)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MYOSIN_MOTORPS51456 Myosin motor domain profile.MYO5A_CHICK69-764
 
 
 		  4A:69-764
B:69-764
C:69-764
D:69-764
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MYOSIN_MOTORPS51456 Myosin motor domain profile.MYO5A_CHICK69-764
 
 
 		  1A:69-764
-
-
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MYOSIN_MOTORPS51456 Myosin motor domain profile.MYO5A_CHICK69-764
 
 
 		  1-
B:69-764
-
-
Biological Unit 3 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MYOSIN_MOTORPS51456 Myosin motor domain profile.MYO5A_CHICK69-764
 
 
 		  1-
-
C:69-764
-
Biological Unit 4 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MYOSIN_MOTORPS51456 Myosin motor domain profile.MYO5A_CHICK69-764
 
 
 		  1-
-
-
D:69-764

(-) Exons   (0, 0)

(no "Exon" information available for 1W8J)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:722
 aligned with MYO5A_CHICK | Q02440 from UniProtKB/Swiss-Prot  Length:1829

    Alignment length:765
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761     
          MYO5A_CHICK     2 AASELYTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADK 766
               SCOP domains d1w8ja1 A:2-62 automated matches                             d1w8ja2 A:63-766 automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee...eeeee.............ee..----.ee........................hhhh...hhhhhhhhhhhhhhh....eeee..eeeee.........hhhhhhhhh.........hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhh...------hhhhhhhhhhhhhhhhhee.......ee..eeeeeeee.....eeeeeeeee..hhhhhh........hhhhhhhhh...hhhhh.....hhhhhhhhhh.........hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...eeee..eee....hhhhhhhhhhhh.hhhhhhhhh.eeeee....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh....hhhhhhhhhh..hhhhhhhhhhh....hhhhhhhhhhhhhh.....ee.......eeeeee..eeeeee..hhhhhhh...hhhhhhhhh.....hhhhhhhh---------------------------------.......hhhhhhhhhhhhhhhhhhh.eeeeeeee...........hhhhhhhhhhhhhhhhhhhhhh....eeeehhhhhhhhhhhh.......hhhhhhhhhhhhhh.hhh.eee...eeee..hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------MYOSIN_MOTOR  PDB: A:69-764 UniProt: 69-764                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             -- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1w8j A   2 AASELYTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRL----DLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVS------NVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQ---------------------------------TSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADK 766
                                    11        21        31        41|    |  51        61        71        81        91       101       111       121       131       141       151       161       171       181  |    191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591  |      -         -         -      |631       641       651       661       671       681       691       701       711       721       731       741       751       761     
                                                                   42   47                                                                                                                                      184    191                                                                                                                                                                                                                                                                                                                                                                                                                594                               628                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:719
 aligned with MYO5A_CHICK | Q02440 from UniProtKB/Swiss-Prot  Length:1829

    Alignment length:764
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760    
          MYO5A_CHICK     1 MAASELYTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRA 764
               SCOP domains d1w8jb1 B:1-62 automated matches                              d1w8jb2 B:63-764 automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh....eeeeee...eeeeeee.........eeeee.----..eee......................hhhh...hhhhhhhhhhhhhhh....eeee..eeeee.........hhhhhhhhh.........hhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhh..------hhhhhhhhhhhhhhhhheeee..eeeee..eeeeeeee.....eeeeeeeee..hhhhhh........hhhhhhhhh...hhhhh.........hhhhh..........hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....eeee..eee....hhhhhhhhhhhh.hhhhhhhhhheeeee....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh....hhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhhhhh.....ee.......eeeee....eeeee..hhhhhhh...hhhhhhhhhh....hhhhhh..---------------------------------.hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee...........hhhhhhhhhhhhhhhhhhhhhhhh..eeeehhhhhhhh.....--....hhhhhhhhhhhhhh.hhh.eee...eeee..hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------MYOSIN_MOTOR  PDB: B:69-764 UniProt: 69-764                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1w8j B   1 MAASELYTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRL----DLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVS------NVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQ---------------------------------TSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMK--DVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRA 764
                                    10        20        30        40 |    | 50        60        70        80        90       100       110       120       130       140       150       160       170       180   |     -|      200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590   |     -         -         -       630       640       650       660       670       680       690       700       710     | 720       730       740       750       760    
                                                                    42   47                                                                                                                                      184    191                                                                                                                                                                                                                                                                                                                                                                                                                594                               628                                                                                     716  |                                             
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        719                                             


Chain C from PDB  Type:PROTEIN  Length:723
 aligned with MYO5A_CHICK | Q02440 from UniProtKB/Swiss-Prot  Length:1829

    Alignment length:766
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760      
          MYO5A_CHICK     1 MAASELYTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADK 766
               SCOP domains d1w8jc1 C:1-62 automated matches                              d1w8jc2 C:63-766 automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeee...eeeeeee..........ee...----..ee......................hhhhh...hhhhhhhhhhhhhh.....eeee..eeeee.....hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhh.------..hhhhhhhhhhhhhhheeee..eeeee..eeeeeeeee...eeee..eeee...hhhhh.........hhhhhhhhh............hhhhhhhhhh.........hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....eeee..eee....hhhhhhhhhhhh.hhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh....hhhhhhhhhh..hhhhhhhhhhh....hhhhhhhhhhhhhh.....ee.......eeeee....eeeee..hhhhhhh...hhhhhhhhhhh...hhhhhhh.---------------------------------..hhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee...........hhhhhhhhhhh.hhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhh.eee...eeee...hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------MYOSIN_MOTOR  PDB: C:69-764 UniProt: 69-764                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             -- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1w8j C   1 MAASELYTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRL----DLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVS------NVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQ---------------------------------TSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADK 766
                                    10        20        30        40 |    | 50        60        70        80        90       100       110       120       130       140       150       160       170       180   |     -|      200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590   |     -         -         -       630       640       650       660       670       680       690       700       710       720       730       740       750       760      
                                                                    42   47                                                                                                                                      184    191                                                                                                                                                                                                                                                                                                                                                                                                                594                               628                                                                                                                                          


Chain D from PDB  Type:PROTEIN  Length:717
 aligned with MYO5A_CHICK | Q02440 from UniProtKB/Swiss-Prot  Length:1829

    Alignment length:762
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764  
          MYO5A_CHICK     5 ELYTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADK 766
               SCOP domains d1w8jd1 D:5-62 automated matches                          d1w8jd2 D:63-766 automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) --------------------------------------    ------------------------Myosin_head-1w8jD01 D:71-752                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              -------------- Pfam domains (1)
           Pfam domains (2) --------------------------------------    ------------------------Myosin_head-1w8jD02 D:71-752                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              -------------- Pfam domains (2)
           Pfam domains (3) --------------------------------------    ------------------------Myosin_head-1w8jD03 D:71-752                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              -------------- Pfam domains (3)
           Pfam domains (4) --------------------------------------    ------------------------Myosin_head-1w8jD04 D:71-752                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              -------------- Pfam domains (4)
         Sec.struct. author .........eee.....eee..............ee..----.ee...............hhhhh....hhhh...hhhhhhhhhhhhhh.....eeee..eeeee.........hhhhhhh...........hhhhhhhhhhhhhhhh...eeeeeee......hhhhhhhhhhhhhh....---..hhhhhhhhhhhhhh.eeee..eeeee..eeeeeeee.....eeeeeeeee...hhhhh........hhhhhhhh..............hhhhhhhhh..........hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhh...hhhhhhh.eeeee....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...----....hhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhhhhh.....ee.......eeeee....eeeee..hhhhhhh...hhhhhhhhh.....hhhhhh.----------------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhheeeeeeee............hhhhhhhhhhhhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhh.eee...eeee..hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------MYOSIN_MOTOR  PDB: D:69-764 UniProt: 69-764                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1w8j D   5 ELYTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRL----DLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSA---NVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIP----DFYDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELF----------------------------------TSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADK 766
                                    14        24        34       | -  |     54        64        74        84        94       104       114       124       134       144       154       164       174       184  |   |194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474        |-   |   494       504       514       524       534       544       554       564       574       584        |-         -         -         -   |   634       644       654       664       674       684       694       704       714       724       734       744       754       764  
                                                                42   47                                                                                                                                         187 191                                                                                                                                                                                                                                                                                                 483  488                                                                                                      593                                628
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1W8J)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: P-loop_NTPase (1112)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (MYO5A_CHICK | Q02440)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0005516    calmodulin binding    Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states.
    GO:0000146    microfilament motor activity    Catalysis of movement along a microfilament, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP).
    GO:0060001    minus-end directed microfilament motor activity    Catalysis of movement along a microfilament towards the minus end, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP). The minus end of an actin filament is the end that does not preferentially add actin monomers.
    GO:0003774    motor activity    Catalysis of the generation of force resulting either in movement along a microfilament or microtubule, or in torque resulting in membrane scission, coupled to the hydrolysis of a nucleoside triphosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0032869    cellular response to insulin stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms.
    GO:0072659    protein localization to plasma membrane    A process in which a protein is transported to, or maintained in, a specific location in the plasma membrane.
    GO:0016192    vesicle-mediated transport    A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0000139    Golgi membrane    The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
    GO:0031941    filamentous actin    A two-stranded helical polymer of the protein actin.
    GO:0032593    insulin-responsive compartment    A small membrane-bounded vesicle that releases its contents by exocytosis in response to insulin stimulation; the contents are enriched in GLUT4, IRAP and VAMP2.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0016459    myosin complex    A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes.

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  1w8j
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  MYO5A_CHICK | Q02440
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MYO5A_CHICK | Q02440: 1oe9 1w7i 1w7j 2dfs

(-) Related Entries Specified in the PDB File

1oe9 CRYSTAL STRUCTURE OF MYOSIN V NUCLEOTIDE- FREE
1w7i CRYSTAL STRUCTURE OF MYOSIN V MOTOR WITHOUT NUCLEOTIDE SOAKED IN 10 MM MGADP
1w7j CRYSTAL STRUCTURE OF MYOSIN V MOTOR WITH ESSENTIAL LIGHT CHAIN + ADP-BEFX - NEAR RIGOR