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(-) Description

Title :  PSAO AND XENON
 
Authors :  A. P. Duff, D. M. Trambaiolo, A. E. Cohen, P. J. Ellis, G. A. Juda, E. M. She D. B. Langley, D. M. Dooley, H. C. Freeman, J. M. Guss
Date :  11 Jul 04  (Deposition) - 17 Nov 04  (Release) - 14 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.24
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Glycoprotein, Manganese, Metal-Binding Oxidase, Oxidoreductase, Pea Seedling, Tpq Oxidoreductase, Copper Amine, Oxidase, Quinone, Xenon (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. P. Duff, D. M. Trambaiolo, A. E. Cohen, P. J. Ellis, G. A. Juda, E. M. Shepard, D. B. Langley, D. M. Dooley, H. C. Freeman, J. M. Guss
Using Xenon As A Probe For Dioxygen-Binding Sites In Copper Amine Oxidases.
J. Mol. Biol. V. 344 599 2004
PubMed-ID: 15533431  |  Reference-DOI: 10.1016/J.JMB.2004.09.075

(-) Compounds

Molecule 1 - AMINE OXIDASE, COPPER CONTAINING
    Chains: A, B, C, D
    EC Number: 1.4.3.6
    Fragment: HOLOENZYME PLUS XENON, RESIDUES 26-674
    Organism Common: PEA
    Organism Scientific: PISUM SATIVUM
    Organism Taxid: 3888
    Other Details: SEEDLING

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 204)

Asymmetric Unit (6, 204)
No.NameCountTypeFull Name
1CU4Ligand/IonCOPPER (II) ION
2IOD176Ligand/IonIODIDE ION
3MN4Ligand/IonMANGANESE (II) ION
4NAG8Ligand/IonN-ACETYL-D-GLUCOSAMINE
5TPQ4Mod. Amino Acid5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE
6XE8Ligand/IonXENON
Biological Unit 1 (3, 100)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
2IOD94Ligand/IonIODIDE ION
3MN-1Ligand/IonMANGANESE (II) ION
4NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
5TPQ2Mod. Amino Acid5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE
6XE-1Ligand/IonXENON
Biological Unit 2 (3, 88)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
2IOD82Ligand/IonIODIDE ION
3MN-1Ligand/IonMANGANESE (II) ION
4NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
5TPQ2Mod. Amino Acid5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE
6XE-1Ligand/IonXENON

(-) Sites  (164, 164)

Asymmetric Unit (164, 164)
No.NameEvidenceResiduesDescription
001AC1SOFTWAREHIS A:442 , HIS A:444 , HIS A:603 , HOH A:2106BINDING SITE FOR RESIDUE CU A 701
002AC2SOFTWAREASP A:451 , PHE A:452 , ASP A:453 , ASP A:592 , ILE A:593 , HOH A:2174BINDING SITE FOR RESIDUE MN A 702
003AC3SOFTWARETYR A:523 , LEU A:525BINDING SITE FOR RESIDUE XE A 710
004AC4SOFTWARELEU A:407 , THR A:618BINDING SITE FOR RESIDUE XE A 711
005AC5SOFTWAREHIS B:442 , HIS B:444 , HIS B:603 , HOH B:2086BINDING SITE FOR RESIDUE CU B 701
006AC6SOFTWAREASP B:451 , PHE B:452 , ASP B:453 , ASP B:592 , ILE B:593 , HOH B:2141BINDING SITE FOR RESIDUE MN B 702
007AC7SOFTWAREPHE B:452 , TYR B:523BINDING SITE FOR RESIDUE XE B 710
008AC8SOFTWARETHR B:618BINDING SITE FOR RESIDUE XE B 711
009AC9SOFTWAREHIS C:442 , HIS C:444 , HIS C:603 , HOH C:2059BINDING SITE FOR RESIDUE CU C 701
010BC1SOFTWAREASP C:451 , PHE C:452 , ASP C:453 , ASP C:592 , ILE C:593 , HOH C:2124BINDING SITE FOR RESIDUE MN C 702
011BC2SOFTWARETYR C:523BINDING SITE FOR RESIDUE XE C 710
012BC3SOFTWARELEU C:407BINDING SITE FOR RESIDUE XE C 711
013BC4SOFTWAREHIS D:442 , HIS D:444 , HIS D:603 , HOH D:2083BINDING SITE FOR RESIDUE CU D 701
014BC5SOFTWAREASP D:451 , PHE D:452 , ASP D:453 , ASP D:592 , ILE D:593 , HOH D:2145BINDING SITE FOR RESIDUE MN D 702
015BC6SOFTWARETYR D:523BINDING SITE FOR RESIDUE XE D 710
016BC7SOFTWARELEU D:407 , THR D:618BINDING SITE FOR RESIDUE XE D 711
017BC8SOFTWAREILE C:186BINDING SITE FOR RESIDUE IOD C1648
018BC9SOFTWAREASN C:83BINDING SITE FOR RESIDUE IOD D1648
019CC1SOFTWAREASN D:83BINDING SITE FOR RESIDUE IOD D1649
020CC2SOFTWAREPRO C:530BINDING SITE FOR RESIDUE IOD C1650
021CC3SOFTWAREARG A:470BINDING SITE FOR RESIDUE IOD A1649
022CC4SOFTWAREILE A:186BINDING SITE FOR RESIDUE IOD A1650
023CC5SOFTWAREASN A:83 , HOH A:2032BINDING SITE FOR RESIDUE IOD A1651
024CC6SOFTWAREASN C:83BINDING SITE FOR RESIDUE IOD C1651
025CC7SOFTWAREASN B:83BINDING SITE FOR RESIDUE IOD B1649
026CC8SOFTWAREASN A:83BINDING SITE FOR RESIDUE IOD A1653
027CC9SOFTWARESER D:475BINDING SITE FOR RESIDUE IOD C1652
028DC1SOFTWAREASN D:83BINDING SITE FOR RESIDUE IOD D1651
029DC2SOFTWAREASN B:83BINDING SITE FOR RESIDUE IOD B1650
030DC3SOFTWAREGLN C:227 , SER D:220BINDING SITE FOR RESIDUE IOD C1653
031DC4SOFTWARETHR C:222BINDING SITE FOR RESIDUE IOD D1652
032DC5SOFTWARETHR A:222BINDING SITE FOR RESIDUE IOD B1652
033DC6SOFTWARELYS B:276BINDING SITE FOR RESIDUE IOD B1653
034DC7SOFTWARELYS A:217 , HIS A:219BINDING SITE FOR RESIDUE IOD A1654
035DC8SOFTWAREASN C:549BINDING SITE FOR RESIDUE IOD C1654
036DC9SOFTWAREASN D:510BINDING SITE FOR RESIDUE IOD D1653
037EC1SOFTWAREGLU A:47 , HOH A:2021BINDING SITE FOR RESIDUE IOD A1655
038EC2SOFTWARELYS C:276 , LYS C:562BINDING SITE FOR RESIDUE IOD C1656
039EC3SOFTWAREGLU B:47BINDING SITE FOR RESIDUE IOD B1654
040EC4SOFTWAREASN A:549BINDING SITE FOR RESIDUE IOD A1657
041EC5SOFTWAREGLU D:47BINDING SITE FOR RESIDUE IOD D1654
042EC6SOFTWARELYS A:276 , LYS A:562BINDING SITE FOR RESIDUE IOD A1658
043EC7SOFTWAREPHE C:214BINDING SITE FOR RESIDUE IOD C1657
044EC8SOFTWARELYS D:276 , LYS D:562BINDING SITE FOR RESIDUE IOD D1655
045EC9SOFTWARELYS C:217 , HIS C:219BINDING SITE FOR RESIDUE IOD C1658
046FC1SOFTWAREGLU B:587 , LYS B:591BINDING SITE FOR RESIDUE IOD B1655
047FC2SOFTWAREASN C:510BINDING SITE FOR RESIDUE IOD C1659
048FC3SOFTWAREASN A:510BINDING SITE FOR RESIDUE IOD A1662
049FC4SOFTWARELEU A:637 , IOD B:1681 , PRO D:213 , PHE D:214BINDING SITE FOR RESIDUE IOD D1657
050FC5SOFTWAREGLY A:500 , ALA A:502 , PRO A:503BINDING SITE FOR RESIDUE IOD A1663
051FC6SOFTWAREARG C:470 , IOD D:1684BINDING SITE FOR RESIDUE IOD D1658
052FC7SOFTWARESER C:75BINDING SITE FOR RESIDUE IOD C1660
053FC8SOFTWARESER B:237BINDING SITE FOR RESIDUE IOD B1656
054FC9SOFTWAREHOH A:2077BINDING SITE FOR RESIDUE IOD B1657
055GC1SOFTWAREGLU C:47BINDING SITE FOR RESIDUE IOD C1661
056GC2SOFTWAREILE D:418 , LYS D:425BINDING SITE FOR RESIDUE IOD D1659
057GC3SOFTWARELYS A:396 , LYS A:402BINDING SITE FOR RESIDUE IOD A1664
058GC4SOFTWARELYS D:396 , GLU D:621BINDING SITE FOR RESIDUE IOD D1661
059GC5SOFTWAREHIS D:57 , PRO D:58 , THR D:59BINDING SITE FOR RESIDUE IOD D1662
060GC6SOFTWAREILE C:418 , GLU C:426BINDING SITE FOR RESIDUE IOD C1663
061GC7SOFTWARELYS C:396 , LYS C:402 , GLU C:621BINDING SITE FOR RESIDUE IOD C1666
062GC8SOFTWAREILE A:418BINDING SITE FOR RESIDUE IOD A1667
063GC9SOFTWAREARG D:252BINDING SITE FOR RESIDUE IOD D1664
064HC1SOFTWARESER D:237BINDING SITE FOR RESIDUE IOD D1665
065HC2SOFTWARELYS B:396BINDING SITE FOR RESIDUE IOD B1661
066HC3SOFTWAREHIS D:219 , HOH D:2049BINDING SITE FOR RESIDUE IOD D1666
067HC4SOFTWAREILE B:418 , LYS B:425BINDING SITE FOR RESIDUE IOD B1662
068HC5SOFTWARESER C:75 , ARG C:152 , ASP C:182BINDING SITE FOR RESIDUE IOD C1668
069HC6SOFTWAREHOH D:2009BINDING SITE FOR RESIDUE IOD D1667
070HC7SOFTWARETHR D:23BINDING SITE FOR RESIDUE IOD D1668
071HC8SOFTWAREHIS C:57 , PRO C:58 , THR C:59BINDING SITE FOR RESIDUE IOD C1669
072HC9SOFTWAREPRO B:213 , PHE B:214 , LEU C:637 , IOD D:1671BINDING SITE FOR RESIDUE IOD B1663
073IC1SOFTWAREGLU D:587BINDING SITE FOR RESIDUE IOD D1669
074IC2SOFTWARETHR B:23 , ARG B:87BINDING SITE FOR RESIDUE IOD B1664
075IC3SOFTWAREARG C:252BINDING SITE FOR RESIDUE IOD C1670
076IC4SOFTWARELEU D:221 , SER D:223BINDING SITE FOR RESIDUE IOD D1670
077IC5SOFTWAREGLU A:587BINDING SITE FOR RESIDUE IOD A1668
078IC6SOFTWAREPHE A:214BINDING SITE FOR RESIDUE IOD A1669
079IC7SOFTWAREASP B:422BINDING SITE FOR RESIDUE IOD B1665
080IC8SOFTWARETHR B:59BINDING SITE FOR RESIDUE IOD B1666
081IC9SOFTWARESER B:75BINDING SITE FOR RESIDUE IOD B1667
082JC1SOFTWARELEU B:221 , SER B:223 , IOD B:1692BINDING SITE FOR RESIDUE IOD B1668
083JC2SOFTWAREIOD B:1663 , LYS D:217BINDING SITE FOR RESIDUE IOD D1671
084JC3SOFTWAREGLY C:500 , ALA C:502 , PRO C:503BINDING SITE FOR RESIDUE IOD C1671
085JC4SOFTWARESER C:638 , ARG D:317BINDING SITE FOR RESIDUE IOD C1672
086JC5SOFTWAREASP C:422BINDING SITE FOR RESIDUE IOD C1673
087JC6SOFTWAREARG B:252BINDING SITE FOR RESIDUE IOD B1670
088JC7SOFTWARELYS C:217BINDING SITE FOR RESIDUE IOD C1674
089JC8SOFTWAREGLU C:587 , LYS C:591BINDING SITE FOR RESIDUE IOD C1675
090JC9SOFTWAREPRO A:289 , SER B:475BINDING SITE FOR RESIDUE IOD A1671
091KC1SOFTWARETYR B:294BINDING SITE FOR RESIDUE IOD B1672
092KC2SOFTWARESER C:237BINDING SITE FOR RESIDUE IOD C1676
093KC3SOFTWAREHIS B:219 , HOH B:2047BINDING SITE FOR RESIDUE IOD B1673
094KC4SOFTWAREASN A:33 , PRO B:119BINDING SITE FOR RESIDUE IOD A1672
095KC5SOFTWAREASP D:422BINDING SITE FOR RESIDUE IOD D1672
096KC6SOFTWAREARG C:559BINDING SITE FOR RESIDUE IOD C1677
097KC7SOFTWARESER B:75 , ARG B:152 , ASP B:182 , HOH B:2015BINDING SITE FOR RESIDUE IOD B1675
098KC8SOFTWAREASP D:49BINDING SITE FOR RESIDUE IOD D1673
099KC9SOFTWAREGLY D:500 , ALA D:502 , PRO D:503BINDING SITE FOR RESIDUE IOD D1674
100LC1SOFTWAREGLY B:500 , ALA B:502 , PRO B:503BINDING SITE FOR RESIDUE IOD B1676
101LC2SOFTWARESER A:75BINDING SITE FOR RESIDUE IOD A1673
102LC3SOFTWARELEU A:637 , SER A:638 , ARG B:317BINDING SITE FOR RESIDUE IOD A1674
103LC4SOFTWAREASP A:422BINDING SITE FOR RESIDUE IOD A1676
104LC5SOFTWAREARG D:35 , SER D:75BINDING SITE FOR RESIDUE IOD D1675
105LC6SOFTWARELYS B:425 , GLU B:426BINDING SITE FOR RESIDUE IOD B1677
106LC7SOFTWARELYS A:217BINDING SITE FOR RESIDUE IOD A1677
107LC8SOFTWARESER D:75 , ARG D:152 , ASP D:182BINDING SITE FOR RESIDUE IOD D1676
108LC9SOFTWAREARG D:87BINDING SITE FOR RESIDUE IOD D1677
109MC1SOFTWARESER C:32 , ILE D:186BINDING SITE FOR RESIDUE IOD D1678
110MC2SOFTWAREARG C:317 , SER D:638BINDING SITE FOR RESIDUE IOD D1679
111MC3SOFTWARETRP B:144 , PHE B:145 , GLU B:147BINDING SITE FOR RESIDUE IOD B1678
112MC4SOFTWARESER A:237BINDING SITE FOR RESIDUE IOD A1678
113MC5SOFTWAREARG A:65 , ARG A:85BINDING SITE FOR RESIDUE IOD A1679
114MC6SOFTWARELYS D:463BINDING SITE FOR RESIDUE IOD D1680
115MC7SOFTWAREASP A:49BINDING SITE FOR RESIDUE IOD A1680
116MC8SOFTWARESER A:32 , ILE B:186BINDING SITE FOR RESIDUE IOD B1679
117MC9SOFTWAREILE C:86 , THR D:56BINDING SITE FOR RESIDUE IOD C1679
118NC1SOFTWAREARG C:65 , ARG C:85BINDING SITE FOR RESIDUE IOD C1680
119NC2SOFTWAREARG A:317 , SER B:638BINDING SITE FOR RESIDUE IOD B1680
120NC3SOFTWAREILE A:353 , ARG B:379BINDING SITE FOR RESIDUE IOD A1681
121NC4SOFTWARELYS B:217 , IOD D:1657BINDING SITE FOR RESIDUE IOD B1681
122NC5SOFTWAREGLU B:505BINDING SITE FOR RESIDUE IOD B1682
123NC6SOFTWARELYS A:635 , GLN B:210 , SER B:211BINDING SITE FOR RESIDUE IOD B1684
124NC7SOFTWARETHR B:173BINDING SITE FOR RESIDUE IOD B1685
125NC8SOFTWAREARG D:65 , ARG D:85BINDING SITE FOR RESIDUE IOD D1683
126NC9SOFTWAREARG C:470 , ASP D:538 , IOD D:1658BINDING SITE FOR RESIDUE IOD D1684
127OC1SOFTWAREHIS A:57 , PRO A:58 , THR A:59BINDING SITE FOR RESIDUE IOD A1683
128OC2SOFTWARELEU C:615 , ILE D:353BINDING SITE FOR RESIDUE IOD D1685
129OC3SOFTWAREGLU A:369 , SER A:370BINDING SITE FOR RESIDUE IOD A1684
130OC4SOFTWAREASN C:352 , ILE C:353BINDING SITE FOR RESIDUE IOD C1682
131OC5SOFTWAREPRO C:363 , LYS D:113BINDING SITE FOR RESIDUE IOD D1686
132OC6SOFTWAREPRO A:363 , LYS B:113BINDING SITE FOR RESIDUE IOD B1686
133OC7SOFTWARETHR A:56BINDING SITE FOR RESIDUE IOD A1685
134OC8SOFTWAREARG B:65 , ARG B:85BINDING SITE FOR RESIDUE IOD B1687
135OC9SOFTWAREASP C:49BINDING SITE FOR RESIDUE IOD C1683
136PC1SOFTWARELEU A:10 , ASP A:45 , LYS A:276BINDING SITE FOR RESIDUE IOD A1686
137PC2SOFTWARELYS A:113 , PRO B:363BINDING SITE FOR RESIDUE IOD A1687
138PC3SOFTWAREVAL C:642 , THR D:222 , SER D:223 , HIS D:322BINDING SITE FOR RESIDUE IOD D1687
139PC4SOFTWARELEU B:10 , ASP B:45 , LYS B:276 , HOH B:2013BINDING SITE FOR RESIDUE IOD B1688
140PC5SOFTWARELEU A:615 , ILE B:353BINDING SITE FOR RESIDUE IOD B1689
141PC6SOFTWAREGLN B:7BINDING SITE FOR RESIDUE IOD B1690
142PC7SOFTWAREASP D:45 , LYS D:276BINDING SITE FOR RESIDUE IOD D1688
143PC8SOFTWAREALA A:504 , LEU A:506 , HOH A:2132BINDING SITE FOR RESIDUE IOD A1688
144PC9SOFTWAREARG A:559BINDING SITE FOR RESIDUE IOD A1689
145QC1SOFTWARELEU C:10 , ASP C:45 , LYS C:276BINDING SITE FOR RESIDUE IOD C1685
146QC2SOFTWAREASN A:519 , LEU B:432BINDING SITE FOR RESIDUE IOD B1691
147QC3SOFTWAREVAL A:642 , THR B:222 , SER B:223 , HIS B:322 , IOD B:1668BINDING SITE FOR RESIDUE IOD B1692
148QC4SOFTWAREALA B:504BINDING SITE FOR RESIDUE IOD B1693
149QC5SOFTWAREASP A:106 , SER A:332 , ALA A:333 , ASN A:334BINDING SITE FOR RESIDUE IOD A1690
150QC6SOFTWAREPRO C:30 , ASN C:33 , PRO D:119BINDING SITE FOR RESIDUE IOD C1686
151QC7SOFTWAREVAL A:165 , GLU A:204 , GLN A:206BINDING SITE FOR RESIDUE IOD A1691
152QC8SOFTWAREVAL B:165 , GLU B:204 , TYR B:205 , GLN B:206BINDING SITE FOR RESIDUE IOD B1694
153QC9SOFTWAREVAL C:165 , GLU C:204 , GLN C:206BINDING SITE FOR RESIDUE IOD C1687
154RC1SOFTWAREVAL D:165 , GLU D:204 , TYR D:205 , GLN D:206BINDING SITE FOR RESIDUE IOD D1689
155RC2SOFTWAREGLU A:505 , IOD B:1696BINDING SITE FOR RESIDUE IOD A1692
156RC3SOFTWAREALA A:504 , IOD A:1692BINDING SITE FOR RESIDUE IOD B1696
157RC4SOFTWAREASN A:131 , GLU A:134BINDING SITE FOR MONO-SACCHARIDE NAG A1131 BOUND TO ASN A 131
158RC5SOFTWAREASN A:558 , GLU A:561BINDING SITE FOR MONO-SACCHARIDE NAG A1558 BOUND TO ASN A 558
159RC6SOFTWAREASN B:131 , SER B:133 , GLU B:134BINDING SITE FOR MONO-SACCHARIDE NAG B1131 BOUND TO ASN B 131
160RC7SOFTWAREASN B:558 , THR B:560 , GLU B:561 , TRP B:581 , GLN B:584 , ARG B:586BINDING SITE FOR MONO-SACCHARIDE NAG B1558 BOUND TO ASN B 558
161RC8SOFTWAREASN C:131 , GLU C:134 , HOH C:2125BINDING SITE FOR MONO-SACCHARIDE NAG C1131 BOUND TO ASN C 131
162RC9SOFTWAREASN C:558 , THR C:560 , GLU C:561BINDING SITE FOR MONO-SACCHARIDE NAG C1558 BOUND TO ASN C 558
163SC1SOFTWAREASN D:131 , GLU D:134BINDING SITE FOR MONO-SACCHARIDE NAG D1131 BOUND TO ASN D 131
164SC2SOFTWAREASN D:558 , THR D:560 , GLU D:561BINDING SITE FOR MONO-SACCHARIDE NAG D1558 BOUND TO ASN D 558

(-) SS Bonds  (10, 10)

Asymmetric Unit
No.Residues
1A:137 -A:158
2A:319 -A:345
3A:647 -B:647
4B:137 -B:158
5B:319 -B:345
6C:137 -C:158
7C:319 -C:345
8C:647 -D:647
9D:137 -D:158
10D:319 -D:345

(-) Cis Peptide Bonds  (14, 14)

Asymmetric Unit
No.Residues
1Pro A:212 -Pro A:213
2Gly A:215 -Pro A:216
3Phe A:610 -Pro A:611
4Trp A:644 -Pro A:645
5Pro B:212 -Pro B:213
6Gly B:215 -Pro B:216
7Phe B:610 -Pro B:611
8Pro C:212 -Pro C:213
9Gly C:215 -Pro C:216
10Phe C:610 -Pro C:611
11Trp C:644 -Pro C:645
12Pro D:212 -Pro D:213
13Gly D:215 -Pro D:216
14Phe D:610 -Pro D:611

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1W2Z)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1COPPER_AMINE_OXID_1PS01164 Copper amine oxidase topaquinone signature.AMO_PEA401-414
 
 
 		  4A:376-389
B:376-389
C:376-389
D:376-389
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1COPPER_AMINE_OXID_1PS01164 Copper amine oxidase topaquinone signature.AMO_PEA401-414
 
 
 		  2A:376-389
B:376-389
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1COPPER_AMINE_OXID_1PS01164 Copper amine oxidase topaquinone signature.AMO_PEA401-414
 
 
 		  2-
-
C:376-389
D:376-389

(-) Exons   (0, 0)

(no "Exon" information available for 1W2Z)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:642
 aligned with AMO_PEA | Q43077 from UniProtKB/Swiss-Prot  Length:674

    Alignment length:642
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670  
              AMO_PEA    31 VQHPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRKIFVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVKKRGLNLSEIVCSSFTMGWFGEEKNVRTVRLDCFMKESTVNIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSVSWANWKFHIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQYGNIMWRHTENGIPNESIEESRTEVNLIVRTIVTVGNYDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEIKEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWTTETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRDVAWPGC 672
               SCOP domains d1w2za2 A:6-98 Copper amine oxidase, domains 1 and 2                                         d1w2za3 A:99-206 Copper amine oxidase, domains 1 and 2                                                      d1w2za1 A:207-647 Copper amine oxidase, domain 3                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains 1w2zA01 A:6-101  [code=3.10.450.40, no name defined]                                            1w2zA02 A:102-197  [code=3.10.450.40, no name defined]                                          ---------------------------------1w2zA03 A:231-647 Copper amine oxidase, Domain 3                                                                                                                                                                                                                                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhh......eeeeeeee...hhhhhhhhhhh........eeeeeeee..eeeeeeee....eeeeeee.........hhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee...........eeeeeeee.....hhhhh....eeeeee....eeeeeee..............hhhhh...........eee......eeee..eeee..eeeeeeee...eeeeeeeeeee....eeeeeeeeeeeeeeeee...........eehhhhhhh..................eeeeeeee.....eeeeeeeeeeeee...eeeeeee.......eeeeee..eeeeeeeeee..eeeeeeeee.....eeeeeeeee...eee....hhhhh.....eeeee..eeee.eeeeeeeeeee.......eeeeeeeeeee.........eeeeeeeee...hhhhh.......eeeeeeeeeee.....eeeeeee............hhhhhhhhhhhh.eeeee....................hhhhhhhhh.......eeeeeeeeeee..hhhhh.....eeee.eeeee...................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COPPER_AMINE_O------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1w2z A   6 VQHPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRKIFVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVKKRGLNLSEIVCSSFTMGWFGEEKNVRTVRLDCFMKESTVNIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSVSWANWKFHIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQYGNIMWRHTENGIPNESIEESRTEVNLIVRTIVTVGNyDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEIKEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWTTETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRDVAWPGC 647
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385 |     395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645  
                                                                                                                                                                                                                                                                                                                                                                                                                       387-TPQ                                                                                                                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:642
 aligned with AMO_PEA | Q43077 from UniProtKB/Swiss-Prot  Length:674

    Alignment length:642
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670  
              AMO_PEA    31 VQHPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRKIFVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVKKRGLNLSEIVCSSFTMGWFGEEKNVRTVRLDCFMKESTVNIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSVSWANWKFHIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQYGNIMWRHTENGIPNESIEESRTEVNLIVRTIVTVGNYDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEIKEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWTTETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRDVAWPGC 672
               SCOP domains d1w2zb2 B:6-98 Copper amine oxidase, domains 1 and 2                                         d1w2zb3 B:99-206 Copper amine oxidase, domains 1 and 2                                                      d1w2zb1 B:207-647 Copper amine oxidase, domain 3                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains 1w2zB01 B:6-101  [code=3.10.450.40, no name defined]                                            1w2zB02 B:102-197  [code=3.10.450.40, no name defined]                                          ---------------------------------1w2zB03 B:231-647 Copper amine oxidase, Domain 3                                                                                                                                                                                                                                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhh......eeeeeeee...hhhhhhhhhhh........eeeeeeee..eeeeeeee....eeeeeee.........hhhhhhhhhhhhhhhhhhhhhhhhh..hhh.eeeeeee...........eeeeeeee.....hhhh.ee..eeeeee....eeeeeee..............hhhhh...........eee......eeee..eeee..eeeeeeee...eeeeeeeeeee....eeeeeeeeeeeeeeeee...........eehhhhhhh..................eeeeeeee.....eeeeeeeeeeeee...eeeeeee.......eeeeee..eeeeeeeeee..eeeeeeeee.....eeeeeeeee...eee....hhhhh.....eeeee..eeee.eeeeeeeeeee.......eeeeeeeeeee.........eeeeeeeee...hhhhh.......eeeeeeeeeee.....eeeeeee............hhhhhhhhhhhh.eeeee....................hhhhhhhhh.......eeeeeeeeeee..hhhhh.....eeee.eeeee...................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COPPER_AMINE_O------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1w2z B   6 VQHPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRKIFVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVKKRGLNLSEIVCSSFTMGWFGEEKNVRTVRLDCFMKESTVNIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSVSWANWKFHIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQYGNIMWRHTENGIPNESIEESRTEVNLIVRTIVTVGNyDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEIKEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWTTETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRDVAWPGC 647
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385 |     395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645  
                                                                                                                                                                                                                                                                                                                                                                                                                       387-TPQ                                                                                                                                                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:642
 aligned with AMO_PEA | Q43077 from UniProtKB/Swiss-Prot  Length:674

    Alignment length:642
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670  
              AMO_PEA    31 VQHPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRKIFVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVKKRGLNLSEIVCSSFTMGWFGEEKNVRTVRLDCFMKESTVNIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSVSWANWKFHIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQYGNIMWRHTENGIPNESIEESRTEVNLIVRTIVTVGNYDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEIKEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWTTETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRDVAWPGC 672
               SCOP domains d1w2zc2 C:6-98 Copper amine oxidase, domains 1 and 2                                         d1w2zc3 C:99-206 Copper amine oxidase, domains 1 and 2                                                      d1w2zc1 C:207-647 Copper amine oxidase, domain 3                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains 1w2zC01 C:6-101  [code=3.10.450.40, no name defined]                                            1w2zC02 C:102-197  [code=3.10.450.40, no name defined]                                          ---------------------------------1w2zC03 C:231-647 Copper amine oxidase, Domain 3                                                                                                                                                                                                                                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhh......eeeeeeee...hhhhhhhhhhh........eeeeeeee..eeeeeeee....eeeeeee.........hhhhhhhhhhhhhhhhhhhhhhhhh..hhh.eeeeeee...........eeeeeeee.....hhhhh....eeeeee....eeeeeee..............hhhhh...........eee......eeee..eeee..eeeeeeee...eeeeeeeeeee....eeeeeeeeeeeeeeeee...........eehhhhhhh..................eeeeeeee.....eeeeeeeeeeeee...eeeeeee.......eeeeee..eeeeeeeeee..eeeeeeeee.....eeeeeeeee...eee....hhhhh.....eeeee..eeee.eeeeeeeeeee.......eeeeeeeeeee.........eeeeeeeee...hhhhh.......eeeeeeeeeee.....eeeeeee............hhhhhhhhhhhh.eeeee....................hhhhhhhhh.......eeeeeeeeeee..hhhhh.....eeee.eeeee...................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COPPER_AMINE_O------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1w2z C   6 VQHPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRKIFVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVKKRGLNLSEIVCSSFTMGWFGEEKNVRTVRLDCFMKESTVNIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSVSWANWKFHIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQYGNIMWRHTENGIPNESIEESRTEVNLIVRTIVTVGNyDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEIKEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWTTETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRDVAWPGC 647
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385 |     395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645  
                                                                                                                                                                                                                                                                                                                                                                                                                       387-TPQ                                                                                                                                                                                                                                                                


Chain D from PDB  Type:PROTEIN  Length:642
 aligned with AMO_PEA | Q43077 from UniProtKB/Swiss-Prot  Length:674

    Alignment length:642
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670  
              AMO_PEA    31 VQHPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRKIFVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVKKRGLNLSEIVCSSFTMGWFGEEKNVRTVRLDCFMKESTVNIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSVSWANWKFHIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQYGNIMWRHTENGIPNESIEESRTEVNLIVRTIVTVGNYDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEIKEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWTTETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRDVAWPGC 672
               SCOP domains d1w2zd2 D:6-98 Copper amine oxidase, domains 1 and 2                                         d1w2zd3 D:99-206 Copper amine oxidase, domains 1 and 2                                                      d1w2zd1 D:207-647 Copper amine oxidase, domain 3                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains 1w2zD01 D:6-101  [code=3.10.450.40, no name defined]                                            1w2zD02 D:102-197  [code=3.10.450.40, no name defined]                                          ---------------------------------1w2zD03 D:231-647 Copper amine oxidase, Domain 3                                                                                                                                                                                                                                                                                                                                                                                  CATH domains
           Pfam domains (1) --Cu_amine_oxidN2-1w2zD01 D:8-95                                                          -----Cu_amine_oxidN3-1w2zD05 D:101-198                                                                 ---------------------Cu_amine_oxid-1w2zD09 D:220-641                                                                                                                                                                                                                                                                                                                                                                                                       ------ Pfam domains (1)
           Pfam domains (2) --Cu_amine_oxidN2-1w2zD02 D:8-95                                                          -----Cu_amine_oxidN3-1w2zD06 D:101-198                                                                 ---------------------Cu_amine_oxid-1w2zD10 D:220-641                                                                                                                                                                                                                                                                                                                                                                                                       ------ Pfam domains (2)
           Pfam domains (3) --Cu_amine_oxidN2-1w2zD03 D:8-95                                                          -----Cu_amine_oxidN3-1w2zD07 D:101-198                                                                 ---------------------Cu_amine_oxid-1w2zD11 D:220-641                                                                                                                                                                                                                                                                                                                                                                                                       ------ Pfam domains (3)
           Pfam domains (4) --Cu_amine_oxidN2-1w2zD04 D:8-95                                                          -----Cu_amine_oxidN3-1w2zD08 D:101-198                                                                 ---------------------Cu_amine_oxid-1w2zD12 D:220-641                                                                                                                                                                                                                                                                                                                                                                                                       ------ Pfam domains (4)
         Sec.struct. author ........hhhhhhhhhhhhhhhh......eeeeeeee...hhhhhhhhhhh........eeeeeeee..eeeeeeee....eeeeeee.........hhhhhhhhhhhhhhhhhhhhhhhhh..hhh.eeeeeee...........eeeeeeee.....hhhh.ee..eeeeee....eeeeeee..............hhhhh...........eee......eeee..eeee..eeeeeeee...eeeeeeeeeee....eeeeeeeeeeeeeeeee...........eehhhhhhh..................eeeeeeee.....eeeeeeeeeeeee...eeeeeee.......eeeeee..eeeeeeeeee..eeeeeeeee.....eeeeeeeee...eee....hhhhh.....eeeee..eeee.eeeeeeeeeee.......eeeeeeeeeee.........eeeeeeeee...hhhhh.......eeeeeeeeeee.....eeeeeee............hhhhhhhhhhhh.eeeee....................hhhhhhhhh.......eeeeeeeeeee..hhhhh..eeeeeee.eeeee...................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COPPER_AMINE_O------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1w2z D   6 VQHPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRKIFVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVKKRGLNLSEIVCSSFTMGWFGEEKNVRTVRLDCFMKESTVNIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSVSWANWKFHIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQYGNIMWRHTENGIPNESIEESRTEVNLIVRTIVTVGNyDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEIKEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWTTETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRDVAWPGC 647
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385 |     395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645  
                                                                                                                                                                                                                                                                                                                                                                                                                       387-TPQ
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (3, 12)

Asymmetric Unit
(-)
Clan: CuAO_N2_N3 (40)
(-)
Clan: no clan defined [family: Cu_amine_oxid] (40)

(-) Gene Ontology  (13, 13)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (AMO_PEA | Q43077)
molecular function
    GO:0052595    aliphatic-amine oxidase activity    Catalysis of the reaction: an aliphatic amine + H2O + O2 = an aldehyde + NH3 + hydrogen peroxide + H+.
    GO:0052594    aminoacetone:oxygen oxidoreductase(deaminating) activity    Catalysis of the reaction: aminoacetone + H2O + O2 = methylglyoxal + NH3 + hydrogen peroxide + H+.
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0052597    diamine oxidase activity    Catalysis of the reaction: a diamine + H2O + O2 = a monoamine + NH3 + hydrogen peroxide.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0052596    phenethylamine:oxygen oxidoreductase (deaminating) activity    Catalysis of the reaction: phenylethylamine + O2 + H2O = phenylacetaldehyde + NH3 + hydrogen peroxide + H+.
    GO:0008131    primary amine oxidase activity    Catalysis of the reaction: a primary amine + H2O + O2 = an aldehyde + NH3 + hydrogen peroxide.
    GO:0048038    quinone binding    Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds.
    GO:0052593    tryptamine:oxygen oxidoreductase (deaminating) activity    Catalysis of the reaction: tryptamine + H2O + O2 = NH3 + indole acetaldehyde + hydrogen peroxide + H+.
biological process
    GO:0009308    amine metabolic process    The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom.
    GO:0097185    cellular response to azide    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an azide stimulus.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  Cis Peptide Bonds
    Gly A:215 - Pro A:216   [ RasMol ]  
    Gly B:215 - Pro B:216   [ RasMol ]  
    Gly C:215 - Pro C:216   [ RasMol ]  
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    Phe D:610 - Pro D:611   [ RasMol ]  
    Pro A:212 - Pro A:213   [ RasMol ]  
    Pro B:212 - Pro B:213   [ RasMol ]  
    Pro C:212 - Pro C:213   [ RasMol ]  
    Pro D:212 - Pro D:213   [ RasMol ]  
    Trp A:644 - Pro A:645   [ RasMol ]  
    Trp C:644 - Pro C:645   [ RasMol ]  
 
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        AMO_PEA | Q43077: 1ksi

(-) Related Entries Specified in the PDB File

1ksi CRYSTAL STRUCTURE OF A EUKARYOTIC (PEA SEEDLING) COPPER-CONTAINING AMINE OXIDASE AT 2.2A RESOLUTION