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(-) Description

Title :  ORNITHINE ACETYLTRANSFERASE (ORF6 GENE PRODUCT - CLAVULANIC ACID BIOSYNTHESIS) FROM STREPTOMYCES CLAVULIGERUS (SEMET STRUCTURE)
 
Authors :  J. M. Elkins, N. J. Kershaw, C. J. Schofield
Date :  14 May 04  (Deposition) - 16 Sep 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.75
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Transferase, Ornithine Acetyltransferase, Clavulanic Acid, N-Acetyl- Ornithine, N-Acetyl-Glutamate, Antibiotic (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Elkins, N. J. Kershaw, C. J. Schofield
X-Ray Crystal Structure Of Ornithine Acetyltransferase From The Clavulanic Acid Biosynthesis Gene Cluster.
Biochem. J. V. 385 565 2005
PubMed-ID: 15352873  |  Reference-DOI: 10.1042/BJ20040814

(-) Compounds

Molecule 1 - ORNITHINE ACETYL-TRANSFERASE
    Chains: A, B, C, D
    EC Number: 2.3.1.35
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PTYB11
    Organism Scientific: STREPTOMYCES CLAVULIGERUS
    Organism Taxid: 1901
    Other Details: SELENOMETHIONINE-SUBSTITUTED

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 34)

Asymmetric Unit (2, 34)
No.NameCountTypeFull Name
1MSE28Mod. Amino AcidSELENOMETHIONINE
2SO46Ligand/IonSULFATE ION
Biological Unit 1 (2, 18)
No.NameCountTypeFull Name
1MSE14Mod. Amino AcidSELENOMETHIONINE
2SO44Ligand/IonSULFATE ION
Biological Unit 2 (2, 16)
No.NameCountTypeFull Name
1MSE14Mod. Amino AcidSELENOMETHIONINE
2SO42Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:111 , GLY A:112 , THR A:148 , LYS A:170 , THR A:181BINDING SITE FOR RESIDUE SO4 A1391
2AC2SOFTWAREHIS A:297 , THR A:381 , GLU A:382 , GLY A:383 , ARG A:386BINDING SITE FOR RESIDUE SO4 A1392
3AC3SOFTWAREARG A:191 , GLY A:233 , GLU A:234BINDING SITE FOR RESIDUE SO4 A1393
4AC4SOFTWARETHR B:111 , GLY B:112 , THR B:148 , LYS B:170 , THR B:181BINDING SITE FOR RESIDUE SO4 B1394
5AC5SOFTWARETHR C:111 , GLY C:112 , THR C:148 , LYS C:170 , THR C:181BINDING SITE FOR RESIDUE SO4 C1394
6AC6SOFTWARETHR D:111 , GLY D:112 , THR D:148 , LYS D:170 , THR D:181 , HOH D:2008BINDING SITE FOR RESIDUE SO4 D1391

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VZ8)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Tyr A:334 -Pro A:335
2Tyr B:334 -Pro B:335
3Tyr C:334 -Pro C:335
4Tyr D:334 -Pro D:335

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VZ8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VZ8)

(-) Exons   (0, 0)

(no "Exon" information available for 1VZ8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:376
 aligned with ARGJ3_STRC2 | P0DJQ6 from UniProtKB/Swiss-Prot  Length:393

    Alignment length:383
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387   
          ARGJ3_STRC2     8 TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVRVSVGGATLVGIAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSE 390
               SCOP domains d1vz8a_ A: Glutamate N-acetyltransferase 2 (ornithine acetyltransferase)                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee...........eeeeeeeeeeeeeeee......hhhhhhhhhhhh..eeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhhhheeeeeee.....hhhhhhhhhhhh.......hhhhhhhhh.......eeeeeee..eeeeeeee............eeeeeeeee.hhhhhhhhhhhhhhhhhhh...........eeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhh......eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh............eeee..eeee..-------hhhhhhhhhhhh...eeeeeee.....eeeeeeee..hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vz8 A   8 TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEmLIASTGVIGRQYPmESIREHLKTLEWPAGEGGFDRAARAImTTDTRPKEVRVSVGGATLVGIAKGVGmLEPDmATLLTFFATDARLDPAEQDRLFRRVmDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAmAIGKCSDDTDIDQERVTIRFGEVEVYPP-------DDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSE 390
                                    17        27        37        47        57        67        77        87        97       107       117  |    127       137       147       157       167      |177 |     187       197       207       217       227       237       247       257       267       277       287       297       307|      317       327        |-      |347       357       367       377       387   
                                                                                                                            106-MSE       120-MSE                    147-MSE                    174-MSE|                       205-MSE                                                                                                308-MSE                     336     344                                              
                                                                                                                                                                                                     179-MSE                                                                                                                                                                                                               


Chain A from PDB  Type:PROTEIN  Length:376
 aligned with GNAT2_STRCL | P0DJQ5 from UniProtKB/Swiss-Prot  Length:393

    Alignment length:383
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387   
          GNAT2_STRCL     8 TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVRVSVGGATLVGIAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSE 390
               SCOP domains d1vz8a_ A: Glutamate N-acetyltransferase 2 (ornithine acetyltransferase)                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee...........eeeeeeeeeeeeeeee......hhhhhhhhhhhh..eeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhhhheeeeeee.....hhhhhhhhhhhh.......hhhhhhhhh.......eeeeeee..eeeeeeee............eeeeeeeee.hhhhhhhhhhhhhhhhhhh...........eeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhh......eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh............eeee..eeee..-------hhhhhhhhhhhh...eeeeeee.....eeeeeeee..hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vz8 A   8 TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEmLIASTGVIGRQYPmESIREHLKTLEWPAGEGGFDRAARAImTTDTRPKEVRVSVGGATLVGIAKGVGmLEPDmATLLTFFATDARLDPAEQDRLFRRVmDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAmAIGKCSDDTDIDQERVTIRFGEVEVYPP-------DDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSE 390
                                    17        27        37        47        57        67        77        87        97       107       117  |    127       137       147       157       167      |177 |     187       197       207       217       227       237       247       257       267       277       287       297       307|      317       327        |-      |347       357       367       377       387   
                                                                                                                            106-MSE       120-MSE                    147-MSE                    174-MSE|                       205-MSE                                                                                                308-MSE                     336     344                                              
                                                                                                                                                                                                     179-MSE                                                                                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:379
 aligned with ARGJ3_STRC2 | P0DJQ6 from UniProtKB/Swiss-Prot  Length:393

    Alignment length:386
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387      
          ARGJ3_STRC2     8 TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVRVSVGGATLVGIAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSEYTT 393
               SCOP domains d1vz8b_ B: Glutamate N-acetyltransferase 2 (ornithine acetyltransferase)                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee...........eeeeee....eeeeee......hhhhhhhhhhh......eeeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeee.....hhhhhhhhhh.........hhhhhhhhh.......eeeeeee..eeeeeeee............eeeeee....hhhhhhhhhhhhhhhhhhh...........eeeeee.......hhhhhhhhhhhhhhhhhhhhhhh......eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh............eeee..eeee..-------hhhhhhhhhhhhhh.eeeeeee.....eeeeeeee..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vz8 B   8 TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEmLIASTGVIGRQYPmESIREHLKTLEWPAGEGGFDRAARAImTTDTRPKEVRVSVGGATLVGIAKGVGmLEPDmATLLTFFATDARLDPAEQDRLFRRVmDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAmAIGKCSDDTDIDQERVTIRFGEVEVYPP-------DDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSEYTT 393
                                    17        27        37        47        57        67        77        87        97       107       117  |    127       137       147       157       167      |177 |     187       197       207       217       227       237       247       257       267       277       287       297       307|      317       327        |-      |347       357       367       377       387      
                                                                                                                            106-MSE       120-MSE                    147-MSE                    174-MSE|                       205-MSE                                                                                                308-MSE                     336     344                                                 
                                                                                                                                                                                                     179-MSE                                                                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:379
 aligned with GNAT2_STRCL | P0DJQ5 from UniProtKB/Swiss-Prot  Length:393

    Alignment length:386
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387      
          GNAT2_STRCL     8 TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVRVSVGGATLVGIAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSEYTT 393
               SCOP domains d1vz8b_ B: Glutamate N-acetyltransferase 2 (ornithine acetyltransferase)                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee...........eeeeee....eeeeee......hhhhhhhhhhh......eeeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeee.....hhhhhhhhhh.........hhhhhhhhh.......eeeeeee..eeeeeeee............eeeeee....hhhhhhhhhhhhhhhhhhh...........eeeeee.......hhhhhhhhhhhhhhhhhhhhhhh......eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh............eeee..eeee..-------hhhhhhhhhhhhhh.eeeeeee.....eeeeeeee..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vz8 B   8 TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEmLIASTGVIGRQYPmESIREHLKTLEWPAGEGGFDRAARAImTTDTRPKEVRVSVGGATLVGIAKGVGmLEPDmATLLTFFATDARLDPAEQDRLFRRVmDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAmAIGKCSDDTDIDQERVTIRFGEVEVYPP-------DDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSEYTT 393
                                    17        27        37        47        57        67        77        87        97       107       117  |    127       137       147       157       167      |177 |     187       197       207       217       227       237       247       257       267       277       287       297       307|      317       327        |-      |347       357       367       377       387      
                                                                                                                            106-MSE       120-MSE                    147-MSE                    174-MSE|                       205-MSE                                                                                                308-MSE                     336     344                                                 
                                                                                                                                                                                                     179-MSE                                                                                                                                                                                                                  


Chain C from PDB  Type:PROTEIN  Length:372
 aligned with ARGJ3_STRC2 | P0DJQ6 from UniProtKB/Swiss-Prot  Length:393

    Alignment length:386
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387      
          ARGJ3_STRC2     8 TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVRVSVGGATLVGIAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSEYTT 393
               SCOP domains d1vz8c_ C: Glutamate N-acetyltransferase 2 (ornithine acetyltransferase)                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee...........eeeeee....eeeeee......hhhhhhhhhhhhh....eeeeee......hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeee.......hhhhhhhhhh...-------hhhhhhhh........eeeeee..eeeeeeee............eeeeee....hhhhhhhhhhhhhhhhhhh...........eeeeee.......hhhhhhhhhhhhhhhhhhhhhhh......eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.............eeee..eeee..-------hhhhhhhhhhhhhh.eeeeeee.....eeeeeeee..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vz8 C   8 TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEmLIASTGVIGRQYPmESIREHLKTLE-------FDRAARAImTTDTRPKEVRVSVGGATLVGIAKGVGmLEPDmATLLTFFATDARLDPAEQDRLFRRVmDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAmAIGKCSDDTDIDQERVTIRFGEVEVYPP-------DDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSEYTT 393
                                    17        27        37        47        57        67        77        87        97       107       117  |    127   |     - |     147       157       167      |177 |     187       197       207       217       227       237       247       257       267       277       287       297       307|      317       327        |-      |347       357       367       377       387      
                                                                                                                            106-MSE       120-MSE    131     139     147-MSE                    174-MSE|                       205-MSE                                                                                                308-MSE                     336     344                                                 
                                                                                                                                                                                                     179-MSE                                                                                                                                                                                                                  


Chain C from PDB  Type:PROTEIN  Length:372
 aligned with GNAT2_STRCL | P0DJQ5 from UniProtKB/Swiss-Prot  Length:393

    Alignment length:386
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387      
          GNAT2_STRCL     8 TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVRVSVGGATLVGIAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSEYTT 393
               SCOP domains d1vz8c_ C: Glutamate N-acetyltransferase 2 (ornithine acetyltransferase)                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee...........eeeeee....eeeeee......hhhhhhhhhhhhh....eeeeee......hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeee.......hhhhhhhhhh...-------hhhhhhhh........eeeeee..eeeeeeee............eeeeee....hhhhhhhhhhhhhhhhhhh...........eeeeee.......hhhhhhhhhhhhhhhhhhhhhhh......eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.............eeee..eeee..-------hhhhhhhhhhhhhh.eeeeeee.....eeeeeeee..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vz8 C   8 TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEmLIASTGVIGRQYPmESIREHLKTLE-------FDRAARAImTTDTRPKEVRVSVGGATLVGIAKGVGmLEPDmATLLTFFATDARLDPAEQDRLFRRVmDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAmAIGKCSDDTDIDQERVTIRFGEVEVYPP-------DDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSEYTT 393
                                    17        27        37        47        57        67        77        87        97       107       117  |    127   |     - |     147       157       167      |177 |     187       197       207       217       227       237       247       257       267       277       287       297       307|      317       327        |-      |347       357       367       377       387      
                                                                                                                            106-MSE       120-MSE    131     139     147-MSE                    174-MSE|                       205-MSE                                                                                                308-MSE                     336     344                                                 
                                                                                                                                                                                                     179-MSE                                                                                                                                                                                                                  


Chain D from PDB  Type:PROTEIN  Length:376
 aligned with ARGJ3_STRC2 | P0DJQ6 from UniProtKB/Swiss-Prot  Length:393

    Alignment length:383
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387   
          ARGJ3_STRC2     8 TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVRVSVGGATLVGIAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSE 390
               SCOP domains d1vz8d_ D: Glutamate N-acetyltransferase 2 (ornithine acetyltransferase)                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----ArgJ-1vz8D01 D:12-390                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (1)
           Pfam domains (2) ----ArgJ-1vz8D02 D:12-390                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (2)
           Pfam domains (3) ----ArgJ-1vz8D03 D:12-390                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (3)
           Pfam domains (4) ----ArgJ-1vz8D04 D:12-390                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (4)
         Sec.struct. author ....eeee.............eeeeeeeeeee.eeee......hhhhhhhhhhhh..eeeeeeeeeee....hhhhhhhhhhhhhhhhhh....hhhhh...eeee.....hhhhhhhhhhh........hhhhhhhhh..........eeee..eeeeeeee............eeeee.....hhhhhhhhhhhhhhhh...ee.........eeee.........hhhhhhhhhhhhhhhhhhhhhhh......eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.............eeee..ee....-------hhhhhhhhhhhhh..eeeeeee.....eeeeeeee..hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vz8 D   8 TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEmLIASTGVIGRQYPmESIREHLKTLEWPAGEGGFDRAARAImTTDTRPKEVRVSVGGATLVGIAKGVGmLEPDmATLLTFFATDARLDPAEQDRLFRRVmDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAmAIGKCSDDTDIDQERVTIRFGEVEVYPP-------DDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSE 390
                                    17        27        37        47        57        67        77        87        97       107       117  |    127       137       147       157       167      |177 |     187       197       207       217       227       237       247       257       267       277       287       297       307|      317       327        |-      |347       357       367       377       387   
                                                                                                                            106-MSE       120-MSE                    147-MSE                    174-MSE|                       205-MSE                                                                                                308-MSE                     336     344                                              
                                                                                                                                                                                                     179-MSE                                                                                                                                                                                                               


Chain D from PDB  Type:PROTEIN  Length:376
 aligned with GNAT2_STRCL | P0DJQ5 from UniProtKB/Swiss-Prot  Length:393

    Alignment length:383
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387   
          GNAT2_STRCL     8 TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVRVSVGGATLVGIAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSE 390
               SCOP domains d1vz8d_ D: Glutamate N-acetyltransferase 2 (ornithine acetyltransferase)                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----ArgJ-1vz8D01 D:12-390                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (1)
           Pfam domains (2) ----ArgJ-1vz8D02 D:12-390                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (2)
           Pfam domains (3) ----ArgJ-1vz8D03 D:12-390                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (3)
           Pfam domains (4) ----ArgJ-1vz8D04 D:12-390                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (4)
         Sec.struct. author ....eeee.............eeeeeeeeeee.eeee......hhhhhhhhhhhh..eeeeeeeeeee....hhhhhhhhhhhhhhhhhh....hhhhh...eeee.....hhhhhhhhhhh........hhhhhhhhh..........eeee..eeeeeeee............eeeee.....hhhhhhhhhhhhhhhh...ee.........eeee.........hhhhhhhhhhhhhhhhhhhhhhh......eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.............eeee..ee....-------hhhhhhhhhhhhh..eeeeeee.....eeeeeeee..hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vz8 D   8 TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEmLIASTGVIGRQYPmESIREHLKTLEWPAGEGGFDRAARAImTTDTRPKEVRVSVGGATLVGIAKGVGmLEPDmATLLTFFATDARLDPAEQDRLFRRVmDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAmAIGKCSDDTDIDQERVTIRFGEVEVYPP-------DDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSE 390
                                    17        27        37        47        57        67        77        87        97       107       117  |    127       137       147       157       167      |177 |     187       197       207       217       227       237       247       257       267       277       287       297       307|      317       327        |-      |347       357       367       377       387   
                                                                                                                            106-MSE       120-MSE                    147-MSE                    174-MSE|                       205-MSE                                                                                                308-MSE                     336     344                                              
                                                                                                                                                                                                     179-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1VZ8)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: no clan defined [family: ArgJ] (6)
(-)
Family: ArgJ (6)
(-)
Streptomyces clavuligerus (5)
1aArgJ-1vz8D01D:12-390
1bArgJ-1vz8D02D:12-390
1cArgJ-1vz8D03D:12-390
1dArgJ-1vz8D04D:12-390

(-) Gene Ontology  (10, 16)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (GNAT2_STRCL | P0DJQ5)
molecular function
    GO:0004042    acetyl-CoA:L-glutamate N-acetyltransferase activity    Catalysis of the reaction: L-glutamate + acetyl-CoA = N-acetyl-L-glutamate + CoA + H(+).
    GO:0004358    glutamate N-acetyltransferase activity    Catalysis of the reaction: N(2)-acetyl-L-ornithine + L-glutamate = N-acetyl-L-glutamate + L-ornithine.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
    GO:0006526    arginine biosynthetic process    The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
    GO:0033050    clavulanic acid biosynthetic process    The chemical reactions and pathways resulting in the formation of clavulanic acid, (2R,3Z,5R)-3-(2-hydroxyethylidene)-7-oxo-4-oxa-1-azabicyclo[3.2.0]heptane-2-carboxylic acid.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain A,B,C,D   (ARGJ3_STRC2 | P0DJQ6)
molecular function
    GO:0004042    acetyl-CoA:L-glutamate N-acetyltransferase activity    Catalysis of the reaction: L-glutamate + acetyl-CoA = N-acetyl-L-glutamate + CoA + H(+).
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0004358    glutamate N-acetyltransferase activity    Catalysis of the reaction: N(2)-acetyl-L-ornithine + L-glutamate = N-acetyl-L-glutamate + L-ornithine.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
    GO:0006526    arginine biosynthetic process    The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARGJ3_STRC2 | P0DJQ6: 1vz6 1vz7 2v4i 2vzk 2yep
        GNAT2_STRCL | P0DJQ5: 1vz6 1vz7 2v4i 2vzk 2yep

(-) Related Entries Specified in the PDB File

1vz6 ORNITHINE ACETYLTRANSFERASE (ORF6 GENE PRODUCT - CLAVULANIC ACID BIOSYNTHESIS) FROM STREPTOMYCES CLAVULIGERUS
1vz7 ORNITHINE ACETYLTRANSFERASE (ORF6 GENE PRODUCT - CLAVULANIC ACID BIOSYNTHESIS) FROM STREPTOMYCES CLAVULIGERUS