1VPL - JenaLib

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Title :   CRYSTAL STRUCTURE OF ABC TRANSPORTER ATP-BINDING PROTEIN (TM0544) FROM THERMOTOGA MARITIMA AT 2.10 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   10 Nov 04 (Deposition) - 23 Nov 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Tm0544, Abc Transporter Atp-Binding Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Abc Transporter Atp-Binding Protein (Tm0544) From Thermotoga Maritima At 2. 10 A Resolution
To Be Published
PubMed: search

Molecule 1 - ABC TRANSPORTER, ATP-BINDING PROTEIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	TM0544
	Organism Scientific	:	THERMOTOGA MARITIMA
	Organism Taxid	:	243274
	Strain	:	MSB8

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	SO4	4	Ligand/Ion	SULFATE ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PRO A:37 , ASN A:38 , GLY A:39 , ALA A:40 , GLY A:41 , LYS A:42 , THR A:43 , HOH A:250 , HOH A:361	BINDING SITE FOR RESIDUE SO4 A 245
2	AC2	SOFTWARE	ARG A:12 , SER A:56 , HOH A:327 , HOH A:379	BINDING SITE FOR RESIDUE SO4 A 246

(no "SS Bond" information available for 1VPL)

(no "Cis Peptide Bond" information available for 1VPL)

(no "SAP(SNP)/Variant" information available for 1VPL)

(no "PROSITE Motif" information available for 1VPL)

(no "Exon" information available for 1VPL)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:238
 aligned with Q9WZ14_THEMA | Q9WZ14 from UniProtKB/TrEMBL  Length:244

    Alignment length:238
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231        
         Q9WZ14_THEMA     2 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVK 239
               SCOP domains d1vpla_ A: Putative ABC transporter TM0544                                                                                                                                                                                                     SCOP domains
               CATH domains 1vplA00 A:2-239 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                           CATH domains
               Pfam domains -----------------------------------------ABC_tran-1vplA01 A:43-163                                                                                                ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee..eeeeeeeeeee....eeeee.....hhhhhhhhhh......eeeeee..ee...hhhhhhh.eeee..........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhhh..eeeeee.hhhhhh....eeeeee..eeeeeeehhhhhhhh...hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vpl A   2 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVK 239
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: P-loop containing nucleotide triphosphate hydrolases (1378)

Thermotoga maritima msb8. Organism_taxid: 243274. Strain: msb8. (2)

1vplA00

A:2-239

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: P-loop_NTPase (1112)

Family: ABC_tran (53)

Thermotoga maritima (4)

ABC_tran-1vplA01

A:43-163

Asymmetric Unit(hide GO term definitions)

Chain A (Q9WZ14_THEMA | Q9WZ14)

molecular function
	GO:0005524		ATP binding		Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0016887		ATPase activity		Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.

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Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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Description

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