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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE THIAMIN PHOSPHATE SYNTHASE (TM0723) FROM THERMOTOGA MARITIMA MSB8 AT 1.52 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  30 Sep 04  (Deposition) - 12 Oct 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.52
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Biol. Unit 2:  A  (6x)
Keywords :  Putative Thiamin Phosphate Synthase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (Tm0723) From Thermotoga Maritima At 1. 52 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN TM0723
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TM0723
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 243274
    Strain: MSB8

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A
Biological Unit 2 (6x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1NA1Ligand/IonSODIUM ION
2SO43Ligand/IonSULFATE ION
Biological Unit 1 (1, 9)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
2SO49Ligand/IonSULFATE ION
Biological Unit 2 (1, 18)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
2SO418Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:81 , ASN A:88 , HIS A:92 , HOH A:199 , HOH A:208 , HOH A:256BINDING SITE FOR RESIDUE NA A 140
2AC2SOFTWAREHIS A:45 , ILE A:46 , THR A:47 , TRP A:116 , ARG A:128 , HOH A:157 , HOH A:238 , HOH A:256 , HOH A:279 , HOH A:303BINDING SITE FOR RESIDUE SO4 A 141
3AC3SOFTWARELYS A:74 , PRO A:75 , TYR A:76 , SER A:77 , HOH A:167 , HOH A:198 , HOH A:237 , HOH A:255 , HOH A:289BINDING SITE FOR RESIDUE SO4 A 142
4AC4SOFTWARELYS A:6 , GLU A:7 , HOH A:187 , HOH A:211 , HOH A:280BINDING SITE FOR RESIDUE SO4 A 143

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VMJ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Lys A:74 -Pro A:75

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:139
 aligned with Q9WZI2_THEMA | Q9WZI2 from UniProtKB/TrEMBL  Length:139

    Alignment length:139
                                    10        20        30        40        50        60        70        80        90       100       110       120       130         
         Q9WZI2_THEMA     1 MKSYRKELWFHTKRRREFINITPLLEECVRESGIKEGLLLCNAMHITASVFINDDEPGLHHDFEVWLEKLAPEKPYSQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEFDGMRPKRVLVKIIGE 139
               SCOP domains d1vmja_ A: Hypothetical protein TM0723                                                                                                      SCOP domains
               CATH domains 1vmjA00 A:1-139 Hypothetical protein                                                                                                        CATH domains
               Pfam domains ------------------UPF0047-1vmjA01 A:19-137                                                                                               -- Pfam domains
         Sec.struct. author .eeeeeeeee......eeeehhhhhhhhhhhhh..eeeeeeee....eeeeee..hhhhhhhhhhhhhhhh...hhhhhhhhh....hhhhhhhhhhhh.eeeeeee..ee......eeeeee......eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vmj A   1 MKSYRKELWFHTKRRREFINITPLLEECVRESGIKEGLLLCNAMHITASVFINDDEPGLHHDFEVWLEKLAPEKPYSQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEFDGMRPKRVLVKIIGE 139
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: no clan defined [family: UPF0047] (8)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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