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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE PHOSPHATE ACETYLTRANSFERASE (NP_416953.1) FROM ESCHERICHIA COLI K12 AT 2.32 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  28 Sep 04  (Deposition) - 12 Oct 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.32
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Np_416953. 1, Putative Phosphate Acetyltransferase, Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Joint Center For Structural Genomics, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Phosphate Acetyltransferase (Np_416953. 1) From Escherichia Coli K12 At 2. 32 A Resolutio
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE PHOSPHATE ACETYLTRANSFERASE
    Chains: A
    EC Number: 2.3.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: EUTD, EUTI
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 20)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2MSE16Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:168 , GLN A:239 , LYS A:252 , ASN A:274 , TYR A:277 , LYS A:278BINDING SITE FOR RESIDUE GOL A 1
2AC2SOFTWARETHR A:127 , SER A:304 , ARG A:305 , HOH A:410BINDING SITE FOR RESIDUE GOL A 344

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VMI)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:290 -Pro A:291

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VMI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VMI)

(-) Exons   (0, 0)

(no "Exon" information available for 1VMI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:329
 aligned with EUTD_ECOLI | P77218 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:329
                                  1                                                                                                                                                                                                                                                                                                                                  
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314         
           EUTD_ECOLI     - ------MIIERCRELALRAPARVVFPDALDQRVLKAAQYLHQQGLATPILVANPFELRQFALSHGVAMDGLQVIDPHGNLAMREEFAHRWLARAGEKTPPDALEKLTDPLMFAAAMVSAGKADVCIAGNLSSTANVLRAGLRIIGLQPGCKTLSSIFLMLPQYSGPALGFADCSVVPQPTAAQLADIALASAETWRAITGEEPRVAMLSFSSNGSARHPCVANVQQATEIVRERAPKLVVDGELQFDAAFVPEVAAQKAPASPLQGKANVMVFPSLEAGNIGYKIAQRLGGYRAVGPLIQGLAAPMHDLSRGCSVQEIIELALVAAVPR 323
               SCOP domains d1vmia_ A: Ethanolamine utilization protein EutD                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------1vmiA02 A:140-296 Isocitrate/Isopropylmalate dehydrogenase-like                                                                                              --------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhh......eee....hhhhhhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhhhhh....eeee....hhhhhhhhhhhhh.........eeeeeeee......eeee........hhhhhhhhhhhhhhhhhhhhh...eeeee.........hhhhhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhhh..........eee..hhhhhhhhhhhhhhhhheeeeeeeee.....eee.....hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vmi A  -6 TDPALRAIIERCRELALRAPARVVFPDALDQRVLKAAQYLHQQGLATPILVANPFELRQFALSHGVAmDGLQVIDPHGNLAmREEFAHRWLARAGEKTPPDALEKLTDPLmFAAAmVSAGKADVCIAGNLSSTANVLRAGLRIIGLQPGCKTLSSIFLmLPQYSGPALGFADCSVVPQPTAAQLADIALASAETWRAITGEEPRVAmLSFSSNGSARHPCVANVQQATEIVRERAPKLVVDGELQFDAAFVPEVAAQKAPASPLQGKANVmVFPSLEAGNIGYKIAQRLGGYRAVGPLIQGLAAPmHDLSRGCSVQEIIELALVAAVPR 323
                                  || 4        14        24        34        44        54       |64        74 |      84        94       104|    | 114       124       134       144       154       164       174       184       194      |204       214       224       234       244       254       264|      274       284       294     | 304       314         
                                  0|                                                          62-MSE        76-MSE                      105-MSE|                                        153-MSE                                         201-MSE                                                         265-MSE                            300-MSE                   
                                   2                                                                                                         110-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1VMI)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A   (EUTD_ECOLI | P77218)
molecular function
    GO:0016407    acetyltransferase activity    Catalysis of the transfer of an acetyl group to an acceptor molecule.
    GO:0008959    phosphate acetyltransferase activity    Catalysis of the reaction: acetyl-CoA + phosphate = CoA + acetyl phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
    GO:0046336    ethanolamine catabolic process    The chemical reactions and pathways resulting in the breakdown of ethanolamine (2-aminoethanol), an important water-soluble base of phospholipid (phosphatidylethanolamine).
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0009408    response to heat    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.

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