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(-) Description

Title :  X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT2G34160
 
Authors :  G. E. Wesenberg, D. W. Smith, G. N. Phillips Jr. , E. Bitto, C. A. Bingman S. T. M. Allard, Center For Eukaryotic Structural Genomics (Ces
Date :  24 Aug 04  (Deposition) - 31 Aug 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Structural Genomics, Protein Structure Initiative, Cesg, At2G34160, Unknown Function, Nitrate, Psi, Center For Eukaryotic Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Center For Eukaryotic Structural Genomics
X-Ray Structure Of Gene Product From Arabidopsis Thaliana At2G34160
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNKNOWN PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Cell Line: B834-DE3
    Expression System Plasmid: PVP13-GW
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AT2G34160
    Organism Common: THALE CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 14)

Asymmetric Unit (3, 14)
No.NameCountTypeFull Name
1K2Ligand/IonPOTASSIUM ION
2MSE8Mod. Amino AcidSELENOMETHIONINE
3NO34Ligand/IonNITRATE ION
Biological Unit 1 (2, 24)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION
2MSE16Mod. Amino AcidSELENOMETHIONINE
3NO38Ligand/IonNITRATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:19 , LYS A:20 , ARG A:22 , TYR A:42 , HOH A:422 , HOH B:423 , HOH B:432BINDING SITE FOR RESIDUE K A 301
2AC2SOFTWARELYS A:40 , ILE A:67 , ASN A:71 , PHE A:73 , PHE B:33BINDING SITE FOR RESIDUE NO3 A 402
3AC3SOFTWARESER A:26 , SER B:26 , GLU B:120 , GLU B:122 , HOH B:437BINDING SITE FOR RESIDUE K B 300
4AC4SOFTWAREGLU A:66 , ILE A:67 , ASN A:70 , ASN A:71 , HOH A:406 , LEU B:32 , PHE B:33BINDING SITE FOR RESIDUE NO3 B 400
5AC5SOFTWAREPRO A:31 , LEU A:32 , PHE A:33 , GLU B:66 , ILE B:67 , ASN B:70 , ASN B:71 , HOH B:409BINDING SITE FOR RESIDUE NO3 B 401
6AC6SOFTWAREPHE A:33 , LYS B:40 , ILE B:67 , ASN B:71 , PHE B:73BINDING SITE FOR RESIDUE NO3 B 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VM0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1VM0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VM0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VM0)

(-) Exons   (0, 0)

(no "Exon" information available for 1VM0)

(-) Sequences/Alignments

Asymmetric Unit
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:93
 aligned with Y2416_ARATH | O22969 from UniProtKB/Swiss-Prot  Length:130

    Alignment length:99
                                    28        38        48        58        68        78        88        98       108         
          Y2416_ARATH    19 KKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAA 117
               SCOP domains d1vm0a_ A: Hypothetical protein At2g34160                                                           SCOP domains
               CATH domains 1vm0A00 A:19-117  [code=3.30.110.20, no name defined]                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee......hhhhhhhhhhhhhhhhheeeeeee..hhhhhhhhhhhhhhh..eeeeeeeeeeeee.------.eeeeeeeeeeee..hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 1vm0 A  19 KKNRIQVSNTKKPLFFYVNLAKRYmQQYNDVELSALGmAIATVVTVTEILKNNGFAVEKKImTSIVDIK------PVQKAKIEITLVKSEKFDELmAAA 117
                                    28        38    |   48       |58        68        78 |      |-     |  98       108     |   
                                                   43-MSE       56-MSE                  80-MSE 87     94                 114-MSE


Chain B from PDB  Type:PROTEIN  Length:103
 aligned with Y2416_ARATH | O22969 from UniProtKB/Swiss-Prot  Length:130

    Alignment length:103
                                    29        39        49        59        69        79        89        99       109       119   
          Y2416_ARATH    20 KNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKE 122
               SCOP domains d1vm0b_ B: Hypothetical protein At2g34160                                                               SCOP domains
               CATH domains 1vm0B00 B:20-122  [code=3.30.110.20, no name defined]                                                   CATH domains
           Pfam domains (1) -Alba-1vm0B01 B:21-84                                            -------------------------------------- Pfam domains (1)
           Pfam domains (2) -Alba-1vm0B02 B:21-84                                            -------------------------------------- Pfam domains (2)
         Sec.struct. author ..eeee.....hhhhhhhhhhhhhhhhheeeeeee..hhhhhhhhhhhhhhh..eeeeeeeeeeeee........eeeeeeeeeeee..hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 1vm0 B  20 KNRIQVSNTKKPLFFYVNLAKRYmQQYNDVELSALGmAIATVVTVTEILKNNGFAVEKKImTSIVDIKDDARGRPVQKAKIEITLVKSEKFDELmAAANEEKE 122
                                    29        39   |    49      | 59        69        79|       89        99       109    |  119   
                                                  43-MSE       56-MSE                  80-MSE                           114-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: AlbA (7)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Y2416_ARATH | O22969)
molecular function
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Y2416_ARATH | O22969: 2q3v

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