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(-) Description

Title :  CRYSTAL STRUCTURE OF AN AIG2-LIKE PROTEIN (A2LD1, GGACT, MGC7867) FROM MUS MUSCULUS AT 1.90 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  07 May 04  (Deposition) - 18 May 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Gamma-Glutamyl Cyclotransferase-Like Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. E. Klock, R. Schwarzenbacher, Q. Xu, D. Mcmullan, P. Abdubek, E. Ambing, H. Axelrod, T. Biorac, J. M. Canaves, H. J. Chiu, A. M. Deacon M. Didonato, M. A. Elsliger, A. Godzik, C. Grittini, S. K. Grzechnik, J. Hale, E. Hampton, G. W. Han, J. Haugen, M. Hornsby, L. Jaroszewski, E. Koesema, A. Kreusch, P. Kuhn, M. D. Miller, K. Moy, E. Nigoghossian, J. Paulsen, K. Quijano, R. Reyes, C. Rife, E. Sims, G. Spraggon, R. C. Stevens, H. Van Den Bedem, J. Velasquez, J. Vincent, A. White, G. Wolf, K. O. Hodgson, J. Wooley, S. A. Lesley, I. A. Wilson
Crystal Structure Of A Conserved Hypothetical Protein (Gi: 13879369) From Mouse At 1. 90 A Resolution Reveals A New Fold.
Proteins V. 61 1132 2005
PubMed-ID: 16224779  |  Reference-DOI: 10.1002/PROT.20610

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1FMT3Ligand/IonFORMIC ACID

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:16 , GLU A:82 , TYR A:143 , ARG A:146 , HOH A:164BINDING SITE FOR RESIDUE FMT A 150
2AC2SOFTWAREVAL A:6 , TYR A:7 , GLY A:8 , THR A:9 , LEU A:10 , HOH A:154 , HOH A:167BINDING SITE FOR RESIDUE FMT A 151
3AC3SOFTWAREARG A:12 , HIS A:17 , LEU A:21 , HOH A:193BINDING SITE FOR RESIDUE FMT A 152

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:35 -A:62

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Cys A:84 -Pro A:85

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VKB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VKB)

(-) Exons   (0, 0)

(no "Exon" information available for 1VKB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:148
 aligned with GGACT_MOUSE | Q923B0 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:151
                              1                                                                                                                                                    
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148 
          GGACT_MOUSE     - --MAHIFVYGTLKRGQPNHKVMLDHSHGLAAFRGRGCTVESFPLVIAGEHNIPWLLYLPGKGHCVTGEIYEVDEQMLRFLDDFEDCPSMYQRTALQVQVLEWEGDGDPGDSVQCFVYTTATYAPEWLFLPYHESYDSEGPHGLRYNPRENR 149
               SCOP domains d1vkba_ A: Hypothetical protein LOC223267                                                                                                               SCOP domains
               CATH domains 1vkbA00 A:-1-149 Hypothetical upf0131 protein ytfp                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..........hhhhhhhhhh.eeeeeeeee.....eeee....eeeee.........eeeeeeehhhhhhhhhhhh......eeeeeeeeeeee.---....eeeeeeeee...hhhhhhh...................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vkb A  -1 HHMAHIFVYGTLKRGQPNHKVMLDHSHGLAAFRGRGCTVESFPLVIAGEHNIPWLLYLPGKGHCVTGEIYEVDEQMLRFLDDFEDCPSMYQRTALQVQVLEWE---DPGDSVQCFVYTTATYAPEWLFLPYHESYDSEGPHGLRYNPRENR 149
                                     8        18        28        38        48        58        68        78        88        98  |   |108       118       128       138       148 
                                                                                                                                101 105
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1VKB)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (GGACT_MOUSE | Q923B0)
molecular function
    GO:0003839    gamma-glutamylcyclotransferase activity    Catalysis of the reaction: (5-L-glutamyl)-L-amino acid = 5-oxoproline + L-amino acid.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
    GO:0042219    cellular modified amino acid catabolic process    The chemical reactions and pathways resulting in the breakdown of compounds derived from amino acids, organic acids containing one or more amino substituents.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.

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 Related Entries

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UniProtKB/Swiss-Prot
        GGACT_MOUSE | Q923B0: 2kl2

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