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(-) Description

Title :  CRYSTAL STRUCTURE OF 4-NITROPHENYLPHOSPHATASE (TM1742) FROM THERMOTOGA MARITIMA AT 2.40 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  22 Mar 04  (Deposition) - 30 Mar 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Tm1742, 4-Nitrophenylphosphatase, Structural Genomics, Jcsg, Psi, Protein Structure Initiative, Joint Center For Structural Genomics, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of 4-Nitrophenylphosphatase (Tm1742) From Thermotoga Maritima At 2. 40 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 4-NITROPHENYLPHOSPHATASE
    Chains: A
    EC Number: 3.1.3.41
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TM1742
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric/Biological Unit (3, 9)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2MSE6Mod. Amino AcidSELENOMETHIONINE
3NI1Ligand/IonNICKEL (II) ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:0 , HIS A:80 , CL A:261 , CL A:262BINDING SITE FOR RESIDUE NI A 260
2AC2SOFTWAREHIS A:0 , NI A:260BINDING SITE FOR RESIDUE CL A 261
3AC3SOFTWAREHIS A:80 , NI A:260BINDING SITE FOR RESIDUE CL A 262

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VJR)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:183 -Pro A:184

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VJR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VJR)

(-) Exons   (0, 0)

(no "Exon" information available for 1VJR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:261
 aligned with Q9X264_THEMA | Q9X264 from UniProtKB/TrEMBL  Length:259

    Alignment length:261
                              1                                                                                                                                                                                                                                                                  
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258 
         Q9X264_THEMA     - --MLDKIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGVDVPDDAVVTSGEITAEHMLKRFGRCRIFLLGTPQLKKVFEAYGHVIDEENPDFVVLGFDKTLTYERLKKACILLRKGKFYIATHPDINCPSKEGPVPDAGSIMAAIEASTGRKPDLIAGKPNPLVVDVISEKFGVPKERMAMVGDRLYTDVKLGKNAGIVSILVLTGETTPEDLERAETKPDFVFKNLGELAKAVQ 259
               SCOP domains d1vjra_ A: Hypothetical protein TM1742                                                                                                                                                                                                                                SCOP domains
               CATH domains 1vjrA01 A:-1-72,A:181-259  [code=3.40.50.1000, no name defined]           1vjrA02 A:73-180 4-nitrophenylphosphatase; domain 2                                                         1vjrA01 A:-1-72,A:181-259  [code=3.40.50.1000, no name defined]                 CATH domains
               Pfam domains ---------Hydrolase_6-1vjrA01 A:8-108                                                                          -----------------------------------------------------------------------Hydrolase_like-1vjrA02 A:180-254                                           ----- Pfam domains
         Sec.struct. author .hhhhhh.eeee......ee..ee..hhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhh....hhh.eeehhhhhhhhhhhhhh..eeeee.hhhhhhhhhhh..ee......eeee......hhhhhhhhhhhhh...eeee.....ee......eehhhhhhhhhhhhhh....ee.....hhhhhhhhhhhh.hhh.eeeee.hhhhhhhhhhhhh.eeeee.....hhhhhhhh.....eee.hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vjr A  -1 HHVLDKIELFILDmDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNmGVDVPDDAVVTSGEITAEHmLKRFGRCRIFLLGTPQLKKVFEAYGHVIDEENPDFVVLGFDKTLTYERLKKACILLRKGKFYIATHPDINCPSKEGPVPDAGSImAAIEASTGRKPDLIAGKPNPLVVDVISEKFGVPKERmAmVGDRLYTDVKLGKNAGIVSILVLTGETTPEDLERAETKPDFVFKNLGELAKAVQ 259
                                     8   |    18        28        38        48        58  |     68        78  |     88        98       108       118       128       138       148       158       168       178       188       198    | |208       218       228       238       248       258 
                                        12-MSE                                           61-MSE              81-MSE                                                                              166-MSE                              203-MSE                                                    
                                                                                                                                                                                                                                        205-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Clan: HAD (186)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9X264_THEMA | Q9X264)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016791    phosphatase activity    Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
biological process
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.

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        Q9X264_THEMA | Q9X264: 1pw5

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