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(-) Description

Title :  DESIGNED PROTEIN BASED ON BACKBONE CONFORMATION OF PROCARBOXYPEPTIDASE-A (1AYE) WITH SIDECHAINS CHOSEN FOR MAXIMAL PREDICTED STABILITY.
 
Authors :  E. A. Merritt, D. Baker, Structural Genomics Of Pathogenic Protoz Consortium (Sgpp)
Date :  19 Mar 04  (Deposition) - 30 Mar 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Engineered Protein, Psi, Protein Structure Initiative, Structural Genomics Of Pathogenic Protozoa Consortium, Sgpp, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Kuhlman, G. Dantas, E. A. Merritt, D. Baker
Designed Protein Based On Backbone Conformation Of Procarboxypeptidase-A (1Aye) With Sidechains Chosen For Maximal Predicted Stability.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DESIGNED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3A
    Expression System Taxid: 562
    Expression System Vector: PLASMID
    Other Details: CLONED AS FUSION WITH STRUCTURAL GENOMICS TARGET LMAJ000047AAA

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1VJQ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VJQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1VJQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VJQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VJQ)

(-) Exons   (0, 0)

(no "Exon" information available for 1VJQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:73
                                                                                                        
               SCOP domains d1vjqa_ A: Carboxypeptidase A prodomain-based design                      SCOP domains
               CATH domains 1vjqA00 A:1-73  [code=3.30.70.340, no name defined]                       CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhh......ee..........eeeeehhhhhhhhhhhhhhh...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                  1vjq A  1 KTIFVIVPTNEEQVAFLEALAKQDELNFDWQNPPTEPGQPVVILIPSDmVEWFLEmLKAKGIPFTVYVEEGGS 73
                                    10        20        30        40        50     |  60        70   
                                                                           49-MSE 56-MSE             


Chain B from PDB  Type:PROTEIN  Length:73
                                                                                                        
               SCOP domains d1vjqb_ B: Carboxypeptidase A prodomain-based design                      SCOP domains
               CATH domains 1vjqB00 B:1-73  [code=3.30.70.340, no name defined]                       CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhhhhh.ee..........eeeeehhhhhhhhhhhhhhhh..eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                  1vjq B  1 KTIFVIVPTNEEQVAFLEALAKQDELNFDWQNPPTEPGQPVVILIPSDmVEWFLEmLKAKGIPFTVYVEEGGS 73
                                    10        20        30        40        50     |  60        70   
                                                                           49-MSE 56-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Designed proteins (167)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1VJQ)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1VJQ)

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  1vjq
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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