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Asym./Biol. Unit (Jmol Viewer)

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Title :   CRYSTAL STRUCTURE OF A DUF151 FAMILY PROTEIN (TM0160) FROM THERMOTOGA MARITIMA AT 1.90 A RESOLUTION

Authors :   Joint Center For Structural Genomics, Joint Center For Struct Genomics (Jcsg)

Date :   10 Mar 04 (Deposition) - 16 Mar 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym./Biol. Unit : A,B

Keywords :   Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Spraggon, D. Pantazatos, H. E. Klock, I. A. Wilson, V. L. Woods, S. A. Lesley
On The Use Of Dxms To Produce More Crystallizable Proteins: Structures Of The T. Maritima Proteins Tm0160 And Tm1171.
Protein Sci. V. 13 3187 2004
PubMed-ID: 15557262 | Reference-DOI: 10.1110/PS.04939904

Molecule 1 - HYPOTHETICAL PROTEIN TM0160
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	TM0160
	Organism Scientific	:	THERMOTOGA MARITIMA
	Organism Taxid	:	2336
	Other Details	:	PREDICTED PROTEIN RELATED TO WOUND INDUCIVE PROTEINS IN PLANTS

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 10)

No.	Name	Count	Type	Full Name
1	CL	2	Ligand/Ion	CHLORIDE ION
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
3	UNL	2	Ligand/Ion	UNKNOWN LIGAND

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:112 , SER A:114	BINDING SITE FOR RESIDUE CL A 301
2	AC2	SOFTWARE	ARG B:112 , PRO B:113 , SER B:114	BINDING SITE FOR RESIDUE CL B 302
3	AC3	SOFTWARE	TRP A:5 , VAL A:6 , ALA A:125	BINDING SITE FOR RESIDUE UNL A 401
4	AC4	SOFTWARE	VAL B:6 , ALA B:125 , HOH B:405	BINDING SITE FOR RESIDUE UNL B 402

Asymmetric/Biological Unit

No.	Residues
1	A:38	-	B:38

(no "Cis Peptide Bond" information available for 1VJL)

(no "SAP(SNP)/Variant" information available for 1VJL)

(no "PROSITE Motif" information available for 1VJL)

(no "Exon" information available for 1VJL)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:143
 aligned with Q9WY07_THEMA | Q9WY07 from UniProtKB/TrEMBL  Length:181

    Alignment length:171
                             1                                                                                                                                                                         
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169 
         Q9WY07_THEMA     - -MRKAWVKTLALDRVSNTPVVILGIEGTNRVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIELEVNETQDEEEEFKKFVENLNIDTFKQMIE 170
               SCOP domains d1vjla_ A: Hypothetical protein TM0160                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee......eeeeeee....eeeeee.hhhhhhhhhhhhhh......hhhhhhhhhhhhh.eeeeeeeeeeee..eeeeeeeeee..--------..eeeeeehhhhhhhhhhhhh..eeeehhhhhhhhee.hhhh--------------------hhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vjl A   0 HmRKAWVKTLALDRVSNTPVVILGIEGTNRVLPIWIGACEGHALALAmEKmEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTFYATLVIRDLT--------AALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIELEVNE--------------------RDLIN 150
                             |       9        19        29        39       |49|       59        69        79        89     |   -    |  109       119       129       139     |   -         -      |149 
                             |                                            47-MSE                                          95      104                                      145                  146    
                             1-MSE                                           50-MSE

Chain B from PDB  Type:PROTEIN  Length:137
 aligned with Q9WY07_THEMA | Q9WY07 from UniProtKB/TrEMBL  Length:181

    Alignment length:142
                             1                                                                                                                                            
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139  
         Q9WY07_THEMA     - -MRKAWVKTLALDRVSNTPVVILGIEGTNRVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIEL 141
               SCOP domains d1vjlb_ B: Hypothetical protein TM0160                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----DNase-RNase-1vjlB01 B:4-141                                                                                                                Pfam domains (1)
           Pfam domains (2) ----DNase-RNase-1vjlB02 B:4-141                                                                                                                Pfam domains (2)
         Sec.struct. author .eeeeeeeeeeee....eeeeeeee....eeeeee.hhhhhhhhhhhhhh......hhhhhhhhhhhhh.eeeeeeeeeeee..eeeeeeeeee...-----....eeeeeehhhhhhhhhhhhh..eeeehhhhhhhhee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vjl B   0 HmRKAWVKTLALDRVSNTPVVILGIEGTNRVLPIWIGACEGHALALAmEKmEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTFYATLVIRDLTY-----EEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIEL 141
                             |       9        19        29        39       |49|       59        69        79        89      |  -  |    109       119       129       139  
                             1-MSE                                        47-MSE                                           96   102                                       
                                                                             50-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Hypothetical protein TM0160 (2)

Superfamily: Hypothetical protein TM0160 (2)

Family: Hypothetical protein TM0160 (2)

Protein domain: Hypothetical protein TM0160 (2)

Thermotoga maritima [TaxId: 2336] (2)

1a	d1vjla_	A:
1b	d1vjlb_	B:

(no "CATH Domain" information available for 1VJL)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: DNase-RNase] (2)

Family: DNase-RNase (2)

Thermotoga maritima (2)

1a	DNase-RNase-1vjlB01	B:4-141
1b	DNase-RNase-1vjlB02	B:4-141

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (Q9WY07_THEMA | Q9WY07)

molecular function
	GO:0004518	nuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids.
biological process
	GO:0090305	nucleic acid phosphodiester bond hydrolysis	The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1vjl)

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 10)

Sites (4, 4)

SS Bonds (1, 1)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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