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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE PEPTIDASE/ENDOGLUCANASE
 
Authors :  Structural Genomix
Date :  01 Dec 03  (Deposition) - 30 Dec 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.86
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Badger, J. M. Sauder, J. M. Adams, S. Antonysamy, K. Bain, M. G. Bergseid, S. G. Buchanan, M. D. Buchanan, Y. Batiyenko, J. A. Christopher, S. Emtage, A. Eroshkina, I. Feil, E. B. Furlong, K. S. Gajiwala, X. Gao, D. He, J. Hendle, A. Huber, K. Hoda, P. Kearins, C. Kissinger, B. Laubert, H. A. Lewis, J. Lin, K. Loomis, D. Lorimer, G. Louie, M. Maletic, C. D. Marsh, I. Miller, J. Molinari, H. J. Muller-Dieckmann, J. M. Newman, B. W. Noland, B. Pagarigan, F. Park, T. S. Peat, K. W. Post, S. Radojicic, A. Ramos, R. Romero, M. E. Rutter, W. E. Sanderson, K. D. Schwinn, J. Tresser, J. Winhoven, T. A. Wright, L. Wu, J. Xu, T. J. Harris
Structural Analysis Of A Set Of Proteins Resulting From A Bacterial Genomics Project
Proteins V. 60 787 2005
PubMed-ID: 16021622  |  Reference-DOI: 10.1002/PROT.20541

(-) Compounds

Molecule 1 - ENDOGLUCANASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: FRVX
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric/Biological Unit (3, 10)
No.NameCountTypeFull Name
1CAC2Ligand/IonCACODYLATE ION
2MSE6Mod. Amino AcidSELENOMETHIONINE
3SO42Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:101 , GLU A:108 , ARG A:109 , ASP A:137 , LEU A:140 , CYS A:141BINDING SITE FOR RESIDUE CAC A 350
2AC2SOFTWAREPHE A:63 , HIS A:65 , VAL A:197 , SER A:199 , CYS A:206BINDING SITE FOR RESIDUE CAC A 351
3AC3SOFTWARELYS A:75 , ARG A:82 , TYR A:188 , HIS A:267 , ARG A:323 , HOH A:450BINDING SITE FOR RESIDUE SO4 A 352
4AC4SOFTWARELYS A:104 , ASN A:105 , ARG A:143 , GLY A:144BINDING SITE FOR RESIDUE SO4 A 353

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VHO)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Pro A:232 -Pro A:233

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VHO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VHO)

(-) Exons   (0, 0)

(no "Exon" information available for 1VHO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:319
 aligned with Q9X0D8_THEMA | Q9X0D8 from UniProtKB/TrEMBL  Length:334

    Alignment length:331
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332 
         Q9X0D8_THEMA     3 METGKLLMELSNLDGPSGYETNVVSYIKSVIEPFVDEAKTTRHGSLIGYKKGKGIGKLAFFAHVDEIGFVVSKVEGQFARLEPVGGVDPKVVYASKVRIYTKNGIERGVIGMLAPHLQDSESRKKVLTYDEIFVDLSLCERDVRVGDIAVIDQTAFETNGKVVGKALDNRASCGVLVKVLEFLKRYDHPWDVYVVFSVQEETGCLGALTGAYEINPDAAIVMDVTFASEPPFSDHIELGKGPVIGLGPVVDRNLVQKIIEIAKKHNVSLQEEAVGGRSGTETDFVQLVRNGVRTSLISIPLKYMHTPVEMVDPRDVEELARLLSLVAVELE 333
               SCOP domains d1vhoa2 A:3-69,A:153-333                                           d1vhoa1 A:70-152         Putative endoglucanase TM1048                             d1vhoa2 A:3-69,A:153-333 Putative endoglucanase TM1048, catalytic domain                                                                                                              SCOP domains
               CATH domains -1vhoA01 A:4-69,A:155-333 Zn peptidases                            1vhoA02 A:70-154         Aminopeptidase/glucanase lid domain; domain 2               1vhoA01 A:4-69,A:155-333 Zn peptidases                                                                                                                                              CATH domains
               Pfam domains -------------------------------------------Peptidase_M42-1vhoA01 A:46-324                                                                                                                                                                                                                                                         --------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh......hhhhhhhhhhhhhhhh.eeee.....eeeee......eeeeeee.....eeeeeee..eeeeee.--------...eeeeee..eeeeee.........hhhhhhh.......eee.hhh........eeee....eee..eeee.hhhhhhhhhhhhhhhhhhh......eeeeeee.....hhhhhhhh.......eeeeeeee.................eee.....hhhhhhhhhhhhhhh....eee.....----..hhhhhhh..eeeeeeee........eeehhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vho A   3 mETGKLLmELSNLDGPSGYETNVVSYIKSVIEPFVDEAKTTRHGSLIGYKKGKGIGKLAFFAHVDEIGFVVSKVEGQFARLEPV--------YASKVRIYTKNGIERGVIGmLAPHLQDSESRKKVPTYDEIFVDLSLCERGVRVGDIAVIDQTAFETNGKVVGKALDNRASCGVLVKVLEFLKRYDHPWDVYVVFSVQEETGCLGALTGAYEINPDAAIVmDVTFASEPPFSDHIELGKGPVIGLGPVVDRNLVQKIIEIAKKHNVSLQEEAVGGR----TDFVQLVRNGVRTSLISIPLKYmHTPVEmVDPRDVEELARLLSLVAVELE 333
                            |      |12        22        32        42        52        62        72        82   |     -  |    102       112 |     122       132       142       152       162       172       182       192       202       212       222 |     232       242       252       262       272      |  - |     292       302   |   312       322       332 
                            |     10-MSE                                                                      86       95                114-MSE                                                                                                       224-MSE                                                279  284                   306-MSE |                     
                            3-MSE                                                                                                                                                                                                                                                                                                              312-MSE
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Peptidase_MH (119)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1VHO)

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    Pro A:232 - Pro A:233   [ RasMol ]  
 

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