1VHC - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF A PUTATIVE KHG/KDPG ALDOLASE

Authors :   Structural Genomix

Date :   01 Dec 03 (Deposition) - 30 Dec 03 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.89

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C  (1x)
Biol. Unit 2: D,E,F  (1x)

Keywords :   Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Badger, J. M. Sauder, J. M. Adams, S. Antonysamy, K. Bain, M. G. Bergseid, S. G. Buchanan, M. D. Buchanan, Y. Batiyenko, J. A. Christopher, S. Emtage, A. Eroshkina, I. Feil, E. B. Furlong, K. S. Gajiwala, X. Gao, D. He, J. Hendle, A. Huber, K. Hoda, P. Kearins, C. Kissinger, B. Laubert, H. A. Lewis, J. Lin, K. Loomis, D. Lorimer, G. Louie, M. Maletic, C. D. Marsh, I. Miller, J. Molinari, H. J. Muller-Dieckmann, J. M. Newman, B. W. Noland, B. Pagarigan, F. Park, T. S. Peat, K. W. Post, S. Radojicic, A. Ramos, R. Romero, M. E. Rutter, W. E. Sanderson, K. D. Schwinn, J. Tresser, J. Winhoven, T. A. Wright, L. Wu, J. Xu, T. J. Harris
Structural Analysis Of A Set Of Proteins Resulting From A Bacterial Genomics Project
Proteins V. 60 787 2005
PubMed-ID: 16021622 | Reference-DOI: 10.1002/PROT.20541
(for further references see the PDB file header)

Molecule 1 - PUTATIVE KHG/KDPG ALDOLASE
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	EDA, HI0047
	Organism Scientific	:	HAEMOPHILUS INFLUENZAE
	Organism Taxid	:	727

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B	C
Biological Unit 2 (1x)	:				D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 24)

No.	Name	Count	Type	Full Name
1	MSE	24	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 12)

No.	Name	Count	Type	Full Name
1	MSE	12	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 12)

No.	Name	Count	Type	Full Name
1	MSE	12	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 1VHC)

(no "SS Bond" information available for 1VHC)

Asymmetric Unit

No.	Residues
1	Phe A:135	-	Pro A:136
2	Phe B:135	-	Pro B:136
3	Phe C:135	-	Pro C:136
4	Phe D:135	-	Pro D:136
5	Phe E:135	-	Pro E:136
6	Phe F:135	-	Pro F:136

(no "SAP(SNP)/Variant" information available for 1VHC)

Asymmetric Unit (2, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ALDOLASE_KDPG_KHG_1	PS00159	KDPG and KHG aldolases active site.	ALKH_HAEIN	40-49	6	A:40-49 B:40-49 C:40-49 D:40-49 E:40-49 F:40-49
2	ALDOLASE_KDPG_KHG_2	PS00160	KDPG and KHG aldolases Schiff-base forming residue.	ALKH_HAEIN	128-141	6	A:128-141 B:128-141 C:128-141 D:128-141 E:128-141 F:128-141

Biological Unit 1 (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ALDOLASE_KDPG_KHG_1	PS00159	KDPG and KHG aldolases active site.	ALKH_HAEIN	40-49	3	A:40-49 B:40-49 C:40-49 - - -
2	ALDOLASE_KDPG_KHG_2	PS00160	KDPG and KHG aldolases Schiff-base forming residue.	ALKH_HAEIN	128-141	3	A:128-141 B:128-141 C:128-141 - - -

Biological Unit 2 (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ALDOLASE_KDPG_KHG_1	PS00159	KDPG and KHG aldolases active site.	ALKH_HAEIN	40-49	3	- - - D:40-49 E:40-49 F:40-49
2	ALDOLASE_KDPG_KHG_2	PS00160	KDPG and KHG aldolases Schiff-base forming residue.	ALKH_HAEIN	128-141	3	- - - D:128-141 E:128-141 F:128-141

(no "Exon" information available for 1VHC)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:212
 aligned with ALKH_HAEIN | P44480 from UniProtKB/Swiss-Prot  Length:212

    Alignment length:212
                                                                                                                                                                                                                                            212 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211| 
           ALKH_HAEIN     2 SYTTQQIIEKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEASGGVKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACGGSWFVEKKLIQSNNWDEIGRLVREVIDIIK-   -
               SCOP domains d1vhca_ A: Hypothetical protein HI0047                                                                                                                                                                               SCOP domains
               CATH domains 1vhcA00 A:2-213 Aldolase class I                                                                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhheeeee...hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhh...eeeee...hhhhhhhhhhhh..eee....hhhhhhhhhhh...ee.ee.hhhhhhhhhhh...eeee......hhhhhhhhhhh.....eeee.......hhhhhhh......eeehhhhhhhhhhh.hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------ALDOLASE_K------------------------------------------------------------------------------ALDOLASE_KDPG_------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vhc A   2 SYTTQQIIEKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNNPmAIEIALEmGISAVKFFPAEASGGVKmIKALLGPYAQLQImPTGGIGLHNIRDYLAIPNIVACGGSWFVEKKLIQSNNWDEIGRLVREVIDIIKE 213
                                    11        21        31        41        51        61        71        81        91       101       111       121     | 131       141   |   151       161       171       181       191       201       211  
                                                                                                                                               119-MSE 127-MSE           145-MSE       159-MSE

Chain B from PDB  Type:PROTEIN  Length:212
 aligned with ALKH_HAEIN | P44480 from UniProtKB/Swiss-Prot  Length:212

    Alignment length:212
                                                                                                                                                                                                                                            212 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211| 
           ALKH_HAEIN     2 SYTTQQIIEKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEASGGVKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACGGSWFVEKKLIQSNNWDEIGRLVREVIDIIK-   -
               SCOP domains d1vhcb_ B: Hypothetical protein HI0047                                                                                                                                                                               SCOP domains
               CATH domains 1vhcB00 B:2-213 Aldolase class I                                                                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhheeeee...hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhh...eeeee...hhhhhhhhhhhh..eee....hhhhhhhhhhh...ee.ee.hhhhhhhhhhh...eeee......hhhhhhhhhh......eeee.......hhhhhhh......eeehhhhhhhhhhh.hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------ALDOLASE_K------------------------------------------------------------------------------ALDOLASE_KDPG_------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vhc B   2 SYTTQQIIEKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNNPmAIEIALEmGISAVKFFPAEASGGVKmIKALLGPYAQLQImPTGGIGLHNIRDYLAIPNIVACGGSWFVEKKLIQSNNWDEIGRLVREVIDIIKE 213
                                    11        21        31        41        51        61        71        81        91       101       111       121     | 131       141   |   151       161       171       181       191       201       211  
                                                                                                                                               119-MSE 127-MSE           145-MSE       159-MSE

Chain C from PDB  Type:PROTEIN  Length:212
 aligned with ALKH_HAEIN | P44480 from UniProtKB/Swiss-Prot  Length:212

    Alignment length:212
                                                                                                                                                                                                                                            212 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211| 
           ALKH_HAEIN     2 SYTTQQIIEKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEASGGVKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACGGSWFVEKKLIQSNNWDEIGRLVREVIDIIK-   -
               SCOP domains d1vhcc_ C: Hypothetical protein HI0047                                                                                                                                                                               SCOP domains
               CATH domains 1vhcC00 C:2-213 Aldolase class I                                                                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhheeeee...hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhh...eeeee...hhhhhhhhhhhh..eee....hhhhhhhhhhh...ee.ee.hhhhhhhhhhh...eeee......hhhhhhhhhhh.....eeee.......hhhhhhh......eeehhhhhhhhhhh.hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------ALDOLASE_K------------------------------------------------------------------------------ALDOLASE_KDPG_------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vhc C   2 SYTTQQIIEKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNNPmAIEIALEmGISAVKFFPAEASGGVKmIKALLGPYAQLQImPTGGIGLHNIRDYLAIPNIVACGGSWFVEKKLIQSNNWDEIGRLVREVIDIIKE 213
                                    11        21        31        41        51        61        71        81        91       101       111       121     | 131       141   |   151       161       171       181       191       201       211  
                                                                                                                                               119-MSE 127-MSE           145-MSE       159-MSE

Chain D from PDB  Type:PROTEIN  Length:212
 aligned with ALKH_HAEIN | P44480 from UniProtKB/Swiss-Prot  Length:212

    Alignment length:212
                                                                                                                                                                                                                                            212 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211| 
           ALKH_HAEIN     2 SYTTQQIIEKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEASGGVKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACGGSWFVEKKLIQSNNWDEIGRLVREVIDIIK-   -
               SCOP domains d1vhcd_ D: Hypothetical protein HI0047                                                                                                                                                                               SCOP domains
               CATH domains 1vhcD00 D:2-213 Aldolase class I                                                                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhheeeee...hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhh...eeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhh...eeeee.hhhhhhhhhhh...eeee......hhhhhhhhhh......eeee.......hhhhhhhh.....eeehhhhhhhhhhh.hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------ALDOLASE_K------------------------------------------------------------------------------ALDOLASE_KDPG_------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vhc D   2 SYTTQQIIEKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNNPmAIEIALEmGISAVKFFPAEASGGVKmIKALLGPYAQLQImPTGGIGLHNIRDYLAIPNIVACGGSWFVEKKLIQSNNWDEIGRLVREVIDIIKE 213
                                    11        21        31        41        51        61        71        81        91       101       111       121     | 131       141   |   151       161       171       181       191       201       211  
                                                                                                                                               119-MSE 127-MSE           145-MSE       159-MSE

Chain E from PDB  Type:PROTEIN  Length:212
 aligned with ALKH_HAEIN | P44480 from UniProtKB/Swiss-Prot  Length:212

    Alignment length:212
                                                                                                                                                                                                                                            212 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211| 
           ALKH_HAEIN     2 SYTTQQIIEKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEASGGVKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACGGSWFVEKKLIQSNNWDEIGRLVREVIDIIK-   -
               SCOP domains d1vhce_ E: Hypothetical protein HI0047                                                                                                                                                                               SCOP domains
               CATH domains 1vhcE00 E:2-213 Aldolase class I                                                                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhheeeee...hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhh...eeeee...hhhhhhhhhhhh..eee....hhhhhhhhhhh...ee.ee.hhhhhhhhhhh...eeee......hhhhhhhhhh......eeee.......hhhhhhh......eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------ALDOLASE_K------------------------------------------------------------------------------ALDOLASE_KDPG_------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vhc E   2 SYTTQQIIEKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNNPmAIEIALEmGISAVKFFPAEASGGVKmIKALLGPYAQLQImPTGGIGLHNIRDYLAIPNIVACGGSWFVEKKLIQSNNWDEIGRLVREVIDIIKE 213
                                    11        21        31        41        51        61        71        81        91       101       111       121     | 131       141   |   151       161       171       181       191       201       211  
                                                                                                                                               119-MSE 127-MSE           145-MSE       159-MSE

Chain F from PDB  Type:PROTEIN  Length:213
 aligned with ALKH_HAEIN | P44480 from UniProtKB/Swiss-Prot  Length:212

    Alignment length:213
                                                                                                                                                                                                                                             212 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210 | 
           ALKH_HAEIN     1 MSYTTQQIIEKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEASGGVKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACGGSWFVEKKLIQSNNWDEIGRLVREVIDIIK-   -
               SCOP domains d1vhcf_ F: Hypothetical protein HI0047                                                                                                                                                                                SCOP domains
               CATH domains 1vhcF00 F:1-213 Aldolase class I                                                                                                                                                                                      CATH domains
           Pfam domains (1) -------Aldolase-1vhcF01 F:8-203                                                                                                                                                                            ---------- Pfam domains (1)
           Pfam domains (2) -------Aldolase-1vhcF02 F:8-203                                                                                                                                                                            ---------- Pfam domains (2)
           Pfam domains (3) -------Aldolase-1vhcF03 F:8-203                                                                                                                                                                            ---------- Pfam domains (3)
           Pfam domains (4) -------Aldolase-1vhcF04 F:8-203                                                                                                                                                                            ---------- Pfam domains (4)
           Pfam domains (5) -------Aldolase-1vhcF05 F:8-203                                                                                                                                                                            ---------- Pfam domains (5)
           Pfam domains (6) -------Aldolase-1vhcF06 F:8-203                                                                                                                                                                            ---------- Pfam domains (6)
         Sec.struct. author ...hhhhhhhhhhhhheeeee...hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhh...eeeee...hhhhhhhhhhhh..eee....hhhhhhhhhhh...ee.ee.hhhhhhhhhhh...eeee......hhhhhhhhhh......eeee.......hhhhhhh......eeehhhhhhhhhhh.hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------ALDOLASE_K------------------------------------------------------------------------------ALDOLASE_KDPG_------------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vhc F   1 LSYTTQQIIEKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNNPmAIEIALEmGISAVKFFPAEASGGVKmIKALLGPYAQLQImPTGGIGLHNIRDYLAIPNIVACGGSWFVEKKLIQSNNWDEIGRLVREVIDIIKE 213
                                    10        20        30        40        50        60        70        80        90       100       110       120      |130       140    |  150       160       170       180       190       200       210   
                                                                                                                                                119-MSE 127-MSE           145-MSE       159-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: Aldolase (457)

Family: Class I aldolase (182)

Protein domain: Hypothetical protein HI0047 (1)

Haemophilus influenzae [TaxId: 727] (1)

1a	d1vhca_	A:
1b	d1vhcb_	B:
1c	d1vhcc_	C:
1d	d1vhcd_	D:
1e	d1vhce_	E:
1f	d1vhcf_	F:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Barrel (2994)

Topology: TIM Barrel (2806)

Homologous Superfamily: Aldolase class I (887)

Haemophilus influenzae. Organism_taxid: 727. (3)

1a	1vhcF00	F:1-213
1b	1vhcD00	D:2-213
1c	1vhcE00	E:2-213
1d	1vhcA00	A:2-213
1e	1vhcB00	B:2-213
1f	1vhcC00	C:2-213

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: TIM_barrel (694)

Family: Aldolase (10)

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (1)

1a	Aldolase-1vhcF01	F:8-203
1b	Aldolase-1vhcF02	F:8-203
1c	Aldolase-1vhcF03	F:8-203
1d	Aldolase-1vhcF04	F:8-203
1e	Aldolase-1vhcF05	F:8-203
1f	Aldolase-1vhcF06	F:8-203

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (ALKH_HAEIN | P44480)

molecular function
	GO:0008675	2-dehydro-3-deoxy-phosphogluconate aldolase activity	Catalysis of the reaction: 2-dehydro-3-deoxy-D-gluconate 6-phosphate = pyruvate + D-glyceraldehyde 3-phosphate.
	GO:0008700	4-hydroxy-2-oxoglutarate aldolase activity	Catalysis of the reaction: 4-hydroxy-2-oxoglutarate = pyruvate + glyoxylate.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		MSE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
(no "Sites" information available for 1vhc)

	Cis Peptide Bonds
		Phe A:135 - Pro A:136	[ RasMol ]
		Phe B:135 - Pro B:136	[ RasMol ]
		Phe C:135 - Pro C:136	[ RasMol ]
		Phe D:135 - Pro D:136	[ RasMol ]
		Phe E:135 - Pro E:136	[ RasMol ]
		Phe F:135 - Pro F:136	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	1vhc
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	ALKH_HAEIN \| P44480
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	ALKH_HAEIN \| P44480
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

(no "Entries Sharing at Least One Protein Chain" available for 1VHC)

(no "Related Entries Specified in the PDB File" available for 1VHC)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 24)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 12)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 6)

CATH Domains (1, 6)

Pfam Domains (1, 6)

Gene Ontology (6, 6)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File