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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CONSERVED HYPOTHETICAL PROTEIN TTHA1091 FROM THERMUS THERMOPHILUS HB8
 
Authors :  S. Satoh, M. Yao, Y. Kousumi, A. Ebihara, K. Matsumoto, A. Okamoto, I. Ta S. Yokoyama, S. Kuramitsu, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  26 Apr 04  (Deposition) - 26 Oct 04  (Release) - 30 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Thermus Thermophilus Hb8, Conserved Hypothetical Protein, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Satoh, M. Yao, Y. Kousumi, A. Ebihara, K. Matsumoto, A. Okamoto, I. Tanaka, S. Yokoyama, S. Kuramitsu
Crystal Structure Of The Conserved Hypothetical Protein Tt1634 From Thermus Thermophilus Hb8
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN TT1634 (TTHA1091)
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TTHA1091
    Organism Scientific: THERMUS THERMOPHILUS HB8
    Organism Taxid: 300852

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric/Biological Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1VGG)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VGG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1VGG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VGG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VGG)

(-) Exons   (0, 0)

(no "Exon" information available for 1VGG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:161
 aligned with Q5SJC3_THET8 | Q5SJC3 from UniProtKB/TrEMBL  Length:161

    Alignment length:161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 
         Q5SJC3_THET8     1 MELKLIPIEKPENLNVILGQAHFIKTVEDLHEALVTAVPGIRFGLAFSEASGKRLVRRSGTDEALVELAVKNLLNLACGHVFLIVLGEGFYPINVLHAVKACPEVVRIYAATANPLKVVVAEEGEQRAILGVMDGFTPLGVEDEAEVAWRKDLLRRLGYKL 161
               SCOP domains d1vgga_ A: Hypothetical protein TT1634 (TTHA1091)                                                                                                                 SCOP domains
               CATH domains -1vggA00 A:2-161 hypothetical protein tt1634                                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.......eeeeee....hhhhhhhhhhhhhh....eeeeee......eeeeee.hhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhh....eeeeee...eeeeeeee..eeeeeeeee.....ee.hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vgg A   1 mELKLIPIEKPENLNVILGQAHFIKTVEDLHEALVTAVPGIRFGLAFSEASGKRLVRRSGTDEALVELAVKNLLNLACGHVFLIVLGEGFYPINVLHAVKACPEVVRIYAATANPLKVVVAEEGEQRAILGVmDGFTPLGVEDEAEVAWRKDLLRRLGYKL 161
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130  |    140       150       160 
                            |                                                                                                                                 133-MSE                        
                            1-MSE                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:161
 aligned with Q5SJC3_THET8 | Q5SJC3 from UniProtKB/TrEMBL  Length:161

    Alignment length:161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 
         Q5SJC3_THET8     1 MELKLIPIEKPENLNVILGQAHFIKTVEDLHEALVTAVPGIRFGLAFSEASGKRLVRRSGTDEALVELAVKNLLNLACGHVFLIVLGEGFYPINVLHAVKACPEVVRIYAATANPLKVVVAEEGEQRAILGVMDGFTPLGVEDEAEVAWRKDLLRRLGYKL 161
               SCOP domains d1vggb_ B: Hypothetical protein TT1634 (TTHA1091)                                                                                                                 SCOP domains
               CATH domains -1vggB00 B:2-161 hypothetical protein tt1634                                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee......eeeeee....hhhhhhhhhhhhhh....eeeeee......eeeeee.hhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhh....eeeeee...eeeeeeee..eeeeeeeee.....ee.hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vgg B   1 mELKLIPIEKPENLNVILGQAHFIKTVEDLHEALVTAVPGIRFGLAFSEASGKRLVRRSGTDEALVELAVKNLLNLACGHVFLIVLGEGFYPINVLHAVKACPEVVRIYAATANPLKVVVAEEGEQRAILGVmDGFTPLGVEDEAEVAWRKDLLRRLGYKL 161
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130  |    140       150       160 
                            1-MSE                                                                                                                             133-MSE                        


Chain C from PDB  Type:PROTEIN  Length:161
 aligned with Q5SJC3_THET8 | Q5SJC3 from UniProtKB/TrEMBL  Length:161

    Alignment length:161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 
         Q5SJC3_THET8     1 MELKLIPIEKPENLNVILGQAHFIKTVEDLHEALVTAVPGIRFGLAFSEASGKRLVRRSGTDEALVELAVKNLLNLACGHVFLIVLGEGFYPINVLHAVKACPEVVRIYAATANPLKVVVAEEGEQRAILGVMDGFTPLGVEDEAEVAWRKDLLRRLGYKL 161
               SCOP domains d1vggc_ C: Hypothetical protein TT1634 (TTHA1091)                                                                                                                 SCOP domains
               CATH domains -1vggC00 C:2-161 hypothetical protein tt1634                                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.......eeeeee....hhhhhhhhhhhhhh....eeeeee......eeeeee.hhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhh....eeeeee...eeeeeeee..eeeeeeeee.....ee.hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vgg C   1 mELKLIPIEKPENLNVILGQAHFIKTVEDLHEALVTAVPGIRFGLAFSEASGKRLVRRSGTDEALVELAVKNLLNLACGHVFLIVLGEGFYPINVLHAVKACPEVVRIYAATANPLKVVVAEEGEQRAILGVmDGFTPLGVEDEAEVAWRKDLLRRLGYKL 161
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130  |    140       150       160 
                            1-MSE                                                                                                                             133-MSE                        


Chain D from PDB  Type:PROTEIN  Length:161
 aligned with Q5SJC3_THET8 | Q5SJC3 from UniProtKB/TrEMBL  Length:161

    Alignment length:161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 
         Q5SJC3_THET8     1 MELKLIPIEKPENLNVILGQAHFIKTVEDLHEALVTAVPGIRFGLAFSEASGKRLVRRSGTDEALVELAVKNLLNLACGHVFLIVLGEGFYPINVLHAVKACPEVVRIYAATANPLKVVVAEEGEQRAILGVMDGFTPLGVEDEAEVAWRKDLLRRLGYKL 161
               SCOP domains d1vggd_ D: Hypothetical protein TT1634 (TTHA1091)                                                                                                                 SCOP domains
               CATH domains -1vggD00 D:2-161 hypothetical protein tt1634                                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.......eeeeee....hhhhhhhhhhhhhh....eeeeee......eeeeee.hhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhh....eeeeee...eeeeeeee..eeeeeeeee.....ee.hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vgg D   1 mELKLIPIEKPENLNVILGQAHFIKTVEDLHEALVTAVPGIRFGLAFSEASGKRLVRRSGTDEALVELAVKNLLNLACGHVFLIVLGEGFYPINVLHAVKACPEVVRIYAATANPLKVVVAEEGEQRAILGVmDGFTPLGVEDEAEVAWRKDLLRRLGYKL 161
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130  |    140       150       160 
                            1-MSE                                                                                                                             133-MSE                        


Chain E from PDB  Type:PROTEIN  Length:161
 aligned with Q5SJC3_THET8 | Q5SJC3 from UniProtKB/TrEMBL  Length:161

    Alignment length:161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 
         Q5SJC3_THET8     1 MELKLIPIEKPENLNVILGQAHFIKTVEDLHEALVTAVPGIRFGLAFSEASGKRLVRRSGTDEALVELAVKNLLNLACGHVFLIVLGEGFYPINVLHAVKACPEVVRIYAATANPLKVVVAEEGEQRAILGVMDGFTPLGVEDEAEVAWRKDLLRRLGYKL 161
               SCOP domains d1vgge_ E: Hypothetical protein TT1634 (TTHA1091)                                                                                                                 SCOP domains
               CATH domains -1vggE00 E:2-161 hypothetical protein tt1634                                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee........eeeeee...hhhhhhhhhhhhhh....eeeeee......eeeeee.hhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhh..eeeeeeee...eeeeeeee..eeeeeeeee.....ee.hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vgg E   1 mELKLIPIEKPENLNVILGQAHFIKTVEDLHEALVTAVPGIRFGLAFSEASGKRLVRRSGTDEALVELAVKNLLNLACGHVFLIVLGEGFYPINVLHAVKACPEVVRIYAATANPLKVVVAEEGEQRAILGVmDGFTPLGVEDEAEVAWRKDLLRRLGYKL 161
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130  |    140       150       160 
                            1-MSE                                                                                                                             133-MSE                        


Chain F from PDB  Type:PROTEIN  Length:161
 aligned with Q5SJC3_THET8 | Q5SJC3 from UniProtKB/TrEMBL  Length:161

    Alignment length:161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 
         Q5SJC3_THET8     1 MELKLIPIEKPENLNVILGQAHFIKTVEDLHEALVTAVPGIRFGLAFSEASGKRLVRRSGTDEALVELAVKNLLNLACGHVFLIVLGEGFYPINVLHAVKACPEVVRIYAATANPLKVVVAEEGEQRAILGVMDGFTPLGVEDEAEVAWRKDLLRRLGYKL 161
               SCOP domains d1vggf_ F: Hypothetical protein TT1634 (TTHA1091)                                                                                                                 SCOP domains
               CATH domains -1vggF00 F:2-161 hypothetical protein tt1634                                                                                                                      CATH domains
           Pfam domains (1) -----Adenosine_kin-1vggF01 F:6-161                                                                                                                                Pfam domains (1)
           Pfam domains (2) -----Adenosine_kin-1vggF02 F:6-161                                                                                                                                Pfam domains (2)
           Pfam domains (3) -----Adenosine_kin-1vggF03 F:6-161                                                                                                                                Pfam domains (3)
           Pfam domains (4) -----Adenosine_kin-1vggF04 F:6-161                                                                                                                                Pfam domains (4)
           Pfam domains (5) -----Adenosine_kin-1vggF05 F:6-161                                                                                                                                Pfam domains (5)
           Pfam domains (6) -----Adenosine_kin-1vggF06 F:6-161                                                                                                                                Pfam domains (6)
         Sec.struct. author .eeeeee.......eeeeee....hhhhhhhhhhhhhh....eeeeee......eeeeee.hhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhh....eeeeee...eeeeeeee..eeeeeeeee.....ee.hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vgg F   1 mELKLIPIEKPENLNVILGQAHFIKTVEDLHEALVTAVPGIRFGLAFSEASGKRLVRRSGTDEALVELAVKNLLNLACGHVFLIVLGEGFYPINVLHAVKACPEVVRIYAATANPLKVVVAEEGEQRAILGVmDGFTPLGVEDEAEVAWRKDLLRRLGYKL 161
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130  |    140       150       160 
                            1-MSE                                                                                                                             133-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Adenosine_kin] (3)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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