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(-) Description

Title :  MYCOBACTERIUM SMEGMATIS DPS TETRAGONAL FORM
 
Authors :  S. Roy, S. Gupta, S. Das, K. Sekar, D. Chatterji, M. Vijayan
Date :  01 Apr 04  (Deposition) - 29 Jun 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.99
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D,E,F  (2x)
Keywords :  Dna-Binding Protein, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Roy, S. Gupta, S. Das, K. Sekar, D. Chatterji, M. Vijayan
X-Ray Analysis Of Mycobacterium Smegmatis Dps And A Comparative Study Involving Other Dps And Dps-Like Molecule
J. Mol. Biol. V. 339 1103 2004
PubMed-ID: 15178251  |  Reference-DOI: 10.1016/J.JMB.2004.04.042

(-) Compounds

Molecule 1 - STARVATION-INDUCED DNA PROTECTING PROTEIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-DPS, PGEM-T EASY
    Expression System Strain: BL21DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: MYCOBACTERIUM SMEGMATIS
    Organism Taxid: 1772
    Synonym: DPS

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (2x): ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 14)

Asymmetric Unit (3, 14)
No.NameCountTypeFull Name
1CD10Ligand/IonCADMIUM ION
2NA2Ligand/IonSODIUM ION
3SO42Ligand/IonSULFATE ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
2NA-1Ligand/IonSODIUM ION
3SO44Ligand/IonSULFATE ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:39 , ASP A:66 , GLU A:70 , HOH A:448BINDING SITE FOR RESIDUE CD A 201
02AC2SOFTWAREHIS B:39 , HOH B:405 , ASP D:66 , GLU D:70BINDING SITE FOR RESIDUE CD B 202
03AC3SOFTWAREHIS C:39 , ASP E:66 , GLU E:70 , HOH E:444BINDING SITE FOR RESIDUE CD E 203
04AC4SOFTWAREASP B:66 , GLU B:70 , HIS D:39 , HOH D:447BINDING SITE FOR RESIDUE CD D 204
05AC5SOFTWAREASP C:66 , GLU C:70 , HOH C:445 , HIS E:39BINDING SITE FOR RESIDUE CD C 205
06AC6SOFTWAREHIS F:39 , ASP F:66 , GLU F:70 , HOH F:449BINDING SITE FOR RESIDUE CD F 206
07AC7SOFTWAREASP A:136 , ASP B:136 , ASP C:136BINDING SITE FOR RESIDUE CD A 207
08AC8SOFTWAREASP D:136 , ASP E:136 , ASP F:136BINDING SITE FOR RESIDUE CD D 208
09AC9SOFTWAREASP C:119 , HOH C:495 , ASP D:129 , HOH D:496BINDING SITE FOR RESIDUE CD D 209
10BC1SOFTWAREGLU C:118 , HOH C:493 , HOH C:494 , GLU F:128BINDING SITE FOR RESIDUE CD C 210
11BC2SOFTWAREGLU A:128 , SO4 A:601 , GLU B:128 , GLU C:128BINDING SITE FOR RESIDUE NA A 211
12BC3SOFTWAREGLU D:128 , SO4 D:602 , GLU E:128BINDING SITE FOR RESIDUE NA D 212
13BC4SOFTWAREGLN A:135 , NA A:211 , GLN B:135 , GLN C:135BINDING SITE FOR RESIDUE SO4 A 601
14BC5SOFTWAREGLN D:135 , NA D:212 , GLN E:135 , GLN F:135BINDING SITE FOR RESIDUE SO4 D 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VEL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1VEL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VEL)

(-) PROSITE Motifs  (1, 6)

Asymmetric Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DPS_1PS00818 Dps protein family signature 1.DPS_MYCS239-55
 
 
 
 
 		  6A:39-55
B:39-55
C:39-55
D:39-55
E:39-55
F:39-55
DPS_MYCSM39-55
 
 
 
 
 		  6A:39-55
B:39-55
C:39-55
D:39-55
E:39-55
F:39-55
Biological Unit 1 (1, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DPS_1PS00818 Dps protein family signature 1.DPS_MYCS239-55
 
 
 
 
 		  12A:39-55
B:39-55
C:39-55
D:39-55
E:39-55
F:39-55
DPS_MYCSM39-55
 
 
 
 
 		  12A:39-55
B:39-55
C:39-55
D:39-55
E:39-55
F:39-55

(-) Exons   (0, 0)

(no "Exon" information available for 1VEL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:163
 aligned with DPS_MYCS2 | A0R692 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:163
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162   
            DPS_MYCS2     3 SFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTH 165
               SCOP domains d1vela_ A: Dodecameric ferritin homolog                                                                                                                             SCOP domains
               CATH domains 1velA00 A:3-165  [code=1.20.1260.10, no name defined]                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------DPS_1            -------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vel A   3 SFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTH 165
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162   


Chain A from PDB  Type:PROTEIN  Length:163
 aligned with DPS_MYCSM | P0C558 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:163
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162   
            DPS_MYCSM     3 SFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTH 165
               SCOP domains d1vela_ A: Dodecameric ferritin homolog                                                                                                                             SCOP domains
               CATH domains 1velA00 A:3-165  [code=1.20.1260.10, no name defined]                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------DPS_1            -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vel A   3 SFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTH 165
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162   


Chain B from PDB  Type:PROTEIN  Length:163
 aligned with DPS_MYCS2 | A0R692 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:163
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162   
            DPS_MYCS2     3 SFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTH 165
               SCOP domains d1velb_ B: Dodecameric ferritin homolog                                                                                                                             SCOP domains
               CATH domains 1velB00 B:3-165  [code=1.20.1260.10, no name defined]                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------DPS_1            -------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vel B   3 SFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTH 165
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162   


Chain B from PDB  Type:PROTEIN  Length:163
 aligned with DPS_MYCSM | P0C558 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:163
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162   
            DPS_MYCSM     3 SFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTH 165
               SCOP domains d1velb_ B: Dodecameric ferritin homolog                                                                                                                             SCOP domains
               CATH domains 1velB00 B:3-165  [code=1.20.1260.10, no name defined]                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------DPS_1            -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vel B   3 SFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTH 165
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162   


Chain C from PDB  Type:PROTEIN  Length:166
 aligned with DPS_MYCS2 | A0R692 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:166
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162      
            DPS_MYCS2     3 SFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTHEGQ 168
               SCOP domains d1velc_ C: Dodecameric ferritin homolog                                                                                                                                SCOP domains
               CATH domains 1velC00 C:3-168  [code=1.20.1260.10, no name defined]                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhh..........eehhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhee...ee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------DPS_1            ----------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vel C   3 SFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTHEGQ 168
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162      


Chain C from PDB  Type:PROTEIN  Length:166
 aligned with DPS_MYCSM | P0C558 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:166
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162      
            DPS_MYCSM     3 SFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTHEGQ 168
               SCOP domains d1velc_ C: Dodecameric ferritin homolog                                                                                                                                SCOP domains
               CATH domains 1velC00 C:3-168  [code=1.20.1260.10, no name defined]                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhh..........eehhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhee...ee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------DPS_1            ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vel C   3 SFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTHEGQ 168
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162      


Chain D from PDB  Type:PROTEIN  Length:163
 aligned with DPS_MYCS2 | A0R692 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:163
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162   
            DPS_MYCS2     3 SFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTH 165
               SCOP domains d1veld_ D: Dodecameric ferritin homolog                                                                                                                             SCOP domains
               CATH domains 1velD00 D:3-165  [code=1.20.1260.10, no name defined]                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------DPS_1            -------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vel D   3 SFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTH 165
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162   


Chain D from PDB  Type:PROTEIN  Length:163
 aligned with DPS_MYCSM | P0C558 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:163
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162   
            DPS_MYCSM     3 SFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTH 165
               SCOP domains d1veld_ D: Dodecameric ferritin homolog                                                                                                                             SCOP domains
               CATH domains 1velD00 D:3-165  [code=1.20.1260.10, no name defined]                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------DPS_1            -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vel D   3 SFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTH 165
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162   


Chain E from PDB  Type:PROTEIN  Length:165
 aligned with DPS_MYCS2 | A0R692 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:165
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160     
            DPS_MYCS2     1 MTSFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTH 165
               SCOP domains d1vele_ E: Dodecameric ferritin homolog                                                                                                                               SCOP domains
               CATH domains 1velE00 E:1-165  [code=1.20.1260.10, no name defined]                                                                                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------DPS_1            -------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vel E   1 MTSFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTH 165
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160     


Chain E from PDB  Type:PROTEIN  Length:165
 aligned with DPS_MYCSM | P0C558 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:165
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160     
            DPS_MYCSM     1 MTSFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTH 165
               SCOP domains d1vele_ E: Dodecameric ferritin homolog                                                                                                                               SCOP domains
               CATH domains 1velE00 E:1-165  [code=1.20.1260.10, no name defined]                                                                                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------DPS_1            -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vel E   1 MTSFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTH 165
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160     


Chain F from PDB  Type:PROTEIN  Length:163
 aligned with DPS_MYCS2 | A0R692 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:163
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162   
            DPS_MYCS2     3 SFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTH 165
               SCOP domains d1velf_ F: Dodecameric ferritin homolog                                                                                                                             SCOP domains
               CATH domains 1velF00 F:3-165  [code=1.20.1260.10, no name defined]                                                                                                               CATH domains
           Pfam domains (1) ---------------Ferritin-1velF01 F:18-160                                                                                                                      ----- Pfam domains (1)
           Pfam domains (2) ---------------Ferritin-1velF02 F:18-160                                                                                                                      ----- Pfam domains (2)
           Pfam domains (3) ---------------Ferritin-1velF03 F:18-160                                                                                                                      ----- Pfam domains (3)
           Pfam domains (4) ---------------Ferritin-1velF04 F:18-160                                                                                                                      ----- Pfam domains (4)
           Pfam domains (5) ---------------Ferritin-1velF05 F:18-160                                                                                                                      ----- Pfam domains (5)
           Pfam domains (6) ---------------Ferritin-1velF06 F:18-160                                                                                                                      ----- Pfam domains (6)
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------DPS_1            -------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vel F   3 SFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTH 165
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162   


Chain F from PDB  Type:PROTEIN  Length:163
 aligned with DPS_MYCSM | P0C558 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:163
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162   
            DPS_MYCSM     3 SFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTH 165
               SCOP domains d1velf_ F: Dodecameric ferritin homolog                                                                                                                             SCOP domains
               CATH domains 1velF00 F:3-165  [code=1.20.1260.10, no name defined]                                                                                                               CATH domains
           Pfam domains (1) ---------------Ferritin-1velF01 F:18-160                                                                                                                      ----- Pfam domains (1)
           Pfam domains (2) ---------------Ferritin-1velF02 F:18-160                                                                                                                      ----- Pfam domains (2)
           Pfam domains (3) ---------------Ferritin-1velF03 F:18-160                                                                                                                      ----- Pfam domains (3)
           Pfam domains (4) ---------------Ferritin-1velF04 F:18-160                                                                                                                      ----- Pfam domains (4)
           Pfam domains (5) ---------------Ferritin-1velF05 F:18-160                                                                                                                      ----- Pfam domains (5)
           Pfam domains (6) ---------------Ferritin-1velF06 F:18-160                                                                                                                      ----- Pfam domains (6)
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------DPS_1            -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vel F   3 SFTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGGQLTH 165
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 6)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: Ferritin (185)

(-) Gene Ontology  (10, 20)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (DPS_MYCSM | P0C558)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0008199    ferric iron binding    Interacting selectively and non-covalently with ferric iron, Fe(III).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016722    oxidoreductase activity, oxidizing metal ions    Catalysis of an oxidation-reduction in which the oxidation state of metal ion is altered.
biological process
    GO:0006879    cellular iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0009295    nucleoid    The region of a virus, bacterial cell, mitochondrion or chloroplast to which the nucleic acid is confined.

Chain A,B,C,D,E,F   (DPS_MYCS2 | A0R692)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0008199    ferric iron binding    Interacting selectively and non-covalently with ferric iron, Fe(III).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016722    oxidoreductase activity, oxidizing metal ions    Catalysis of an oxidation-reduction in which the oxidation state of metal ion is altered.
biological process
    GO:0006879    cellular iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0009295    nucleoid    The region of a virus, bacterial cell, mitochondrion or chloroplast to which the nucleic acid is confined.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DPS_MYCS2 | A0R692: 1uvh 1vei 1veq 2yw6 2yw7
        DPS_MYCSM | P0C558: 1uvh 1vei 1veq 2yw6 2yw7

(-) Related Entries Specified in the PDB File

1vei MYCOBACTERIUM SMEGMATIS DPS, (F 4 3 2)
1veq MYCOBACTERIUM SMEGMATIS DPS, HEXAGONAL FORM, (P63)