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(-) Description

Title :  ATP-PHOSPHORIBOSYLTRANSFERASE(HISG) FROM THERMUS THERMOPHILUS HB8
 
Authors :  R. Omi, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  27 Mar 04  (Deposition) - 21 Jun 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Omi, M. Goto, I. Miyahara, K. Hirotsu
Crystal Structure Of Atp-Phosphoribosyltransferase(Hisg)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ATP PHOSPHORIBOSYLTRANSFERASE
    Chains: A
    EC Number: 2.4.2.17
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 274

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:155 , GLN A:156 , THR A:157 , GLY A:158 , ALA A:159 , THR A:160 , HOH A:1005 , HOH A:1045 , HOH A:1064 , HOH A:1077BINDING SITE FOR RESIDUE SO4 A 1001
2AC2SOFTWAREMET A:1 , ARG A:2 , ARG A:3 , ARG A:101 , THR A:145 , HOH A:1080 , HOH A:1091BINDING SITE FOR RESIDUE GOL A 1002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VE4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1VE4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VE4)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ATP_P_PHORIBOSYLTRPS01316 ATP phosphoribosyltransferase signature.HIS1_THET2140-161  1A:140-161

(-) Exons   (0, 0)

(no "Exon" information available for 1VE4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:201
 aligned with HIS1_THET2 | P62381 from UniProtKB/Swiss-Prot  Length:206

    Alignment length:206
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200      
           HIS1_THET2     1 MRRFALTVALPKGRMFREAYEVLKRAGLDLPEVEGERTLLHGKEGGVALLELRNKDVPIYVDLGIAEIGVVGKDVLLDSGRDLFEPVDLGFGACRLSLIRRPGDTGPIRRVATKYPNFTARLLKERGWAADVVELSGNIELAAVTGLADAVVDVVQTGATLRAAGLVEVEVLAHSTARLVVNRQALKLKRAVLKPLIQRLRELSGS 206
               SCOP domains d1ve4a1 A:1-206 ATP phosphoribosy     ltransferase (ATP-PRTase, HisG), catalytic domain                                                                                                                        SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------1ve4A02 A:94-176 Periplasmic binding protein-like II                               ------------------------------ CATH domains
               Pfam domains ---------------------------------------------------HisG-1ve4A01 A:52-204                                                                                                                                    -- Pfam domains
         Sec.struct. author .....eeeeee...hhhhhhhhhhhh.......-----.ee.....eeeeeehhhhhhhhhhh....eeeeehhhhhhh....eeeee.....eeeeeee..........eee.hhhhhhhhhhhh.....eee....hhhhhhh....eeeeee..hhhhhhh..eeeeeeeee.eeeeehhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------ATP_P_PHORIBOSYLTR    --------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ve4 A   1 MRRFALTVALPKGRMFREAYEVLKRAGLDLPEV-----LLHGKEGGVALLELRNKDVPIYVDLGIAEIGVVGKDVLLDSGRDLFEPVDLGFGACRLSLIRRPGDTGPIRRVATKYPNFTARLLKERGWAADVVELSGNIELAAVTGLADAVVDVVQTGATLRAAGLVEVEVLAHSTARLVVNRQALKLKRAVLKPLIQRLRELSGS 206
                                    10        20        30  |     40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200      
                                                           33    39
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: PBP (391)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (HIS1_THET2 | P62381)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003879    ATP phosphoribosyltransferase activity    Catalysis of the reaction: 1-(5-phospho-D-ribosyl)-ATP + diphosphate = ATP + 5-phospho-alpha-D-ribose 1-diphosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0000105    histidine biosynthetic process    The chemical reactions and pathways resulting in the formation of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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