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(-) Description

Title :  CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN ST2072 FROM SULFOLOBUS TOKODAII
 
Authors :  E. Tanabe, Y. Horiike, K. Tsumoto, Y. Yasutake, M. Yao, I. Tanaka, I. Kum
Date :  26 Mar 04  (Deposition) - 22 Mar 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Structural Genomics, Zinc Binding Protein, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Tanabe, Y. Horiike, K. Tsumoto, Y. Yasutake, M. Yao, I. Tanaka, I. Kumagai
Crystal Structure Of The Uncharacterized Protein St2072 Fro Sulfolobus Tokodaii
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN (ST2072)
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET20B
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ST2072
    Organism Scientific: SULFOLOBUS TOKODAII
    Organism Taxid: 111955

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
3ZN1Ligand/IonZINC ION
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE
2SO43Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:43 , THR A:44 , THR A:45 , TRP A:111 , ARG A:123 , ARG A:125 , HOH A:205BINDING SITE FOR RESIDUE SO4 A 135
2AC2SOFTWAREGLU A:52 , HIS A:77 , ASP A:81 , ASN A:83 , HIS A:87 , HOH A:243BINDING SITE FOR RESIDUE ZN A 136

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VE0)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:121 -Pro A:122

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:134
 aligned with Q96YV5_SULTO | Q96YV5 from UniProtKB/TrEMBL  Length:134

    Alignment length:134
                                    10        20        30        40        50        60        70        80        90       100       110       120       130    
         Q96YV5_SULTO     1 MKIISKEFTVKTRSRFDSIDITEQVSEAIKGINNGIAHVIVKHTTCAIIINEAESGLMKDFLNWAKKLVPPDGEFEHNIIDNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQRIILLEFDGPRTRTVLVKSMGE 134
               SCOP domains d1ve0a_ A: automated matches                                                                                                           SCOP domains
               CATH domains -1ve0A00 A:2-134 Hypothetical protein                                                                                                  CATH domains
               Pfam domains ------------------UPF0047-1ve0A01 A:19-132                                                                                          -- Pfam domains
         Sec.struct. author .eeeeeeeeee.....eeeehhhhhhhhh....eeeeeeee....eeeeee..hhhhhhhhhhhhhhhh.....hhhhhh..hhhhhhhhhhhh.eeeeeee..ee......eeeeee.....eeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ve0 A   1 mKIISKEFTVKTRSRFDSIDITEQVSEAIKGINNGIAHVIVKHTTCAIIINEAESGLmKDFLNWAKKLVPPDGEFEHNIIDNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQRIILLEFDGPRTRTVLVKSmGE 134
                            |       10        20        30        40        50       |60        70        80        90       100       110       120       130 |  
                            |                                                       58-MSE                                                                   132-MSE
                            1-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: no clan defined [family: UPF0047] (8)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q96YV5_SULTO | Q96YV5)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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