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(-) Description

Title :  CAPSID STABILIZING PROTEIN GPD, NMR, 20 STRUCTURES
 
Authors :  H. Iwai, P. Forrer, A. Pluckthun, P. Guntert, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  17 Mar 04  (Deposition) - 29 Mar 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Virus/Viral Protein, Capsid Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Scottish Structural Proteomics Facility, Sspf, Riken Structural Genomics/Proteomics Initiative, Rsgi (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Iwai, P. Forrer, A. Pluckthun, P. Guntert
Nmr Solution Structure Of The Monomeric Form Of The Bacteriophage Lambda Capsid Stabilizing Protein Gpd.
J. Biomol. Nmr V. 31 351 2005
PubMed-ID: 15929002  |  Reference-DOI: 10.1007/S10858-005-0945-7
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HEAD DECORATION PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PAT101
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: T7-PROMOTER
    Expression System Vector Type: PLASMID
    Organism Scientific: ENTEROBACTERIA PHAGE LAMBDA
    Organism Taxid: 10710
    Synonym: GPD, MAJOR CAPSID PROTEIN D

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:109
 aligned with DECO_LAMBD | P03712 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:109
                                    11        21        31        41        51        61        71        81        91       101         
           DECO_LAMBD     2 TSKETFTHYQPQGNSDPAHTATAPGGLSAKAPAMTPLMLDTSSRKLVAWDGTTDGAAVGILAVAADQTSTTLTFYKSGTFRYEDVLWPEAASDETKKRTAFAGTAISIV 110
               SCOP domains d1vd0a_ A: automated matches                                                                                  SCOP domains
               CATH domains ------------------1vd0A01 A:19-109  [code=2.40.300.10, no name defined]                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eeee...........eeeee......eee........eeeee..........eeee.................hhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 1vd0 A   1 TSKETFTHYQPQGNSDPAHTATAPGGLSAKAPAMTPLMLDTSSRKLVAWDGTTDGAAVGILAVAADQTSTTLTFYKSGTFRYEDVLWPEAASDETKKRTAFAGTAISIV 109
                                    10        20        30        40        50        60        70        80        90       100
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (5, 5)

NMR Structure(hide GO term definitions)
Chain A   (DECO_LAMBD | P03712)
biological process
    GO:0019076    viral release from host cell    The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
cellular component
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0098021    viral capsid, decoration    Component of the virus capsid (head), located on the outer head surface. Involved in the stabilization of the head structure and usually non-essential.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DECO_LAMBD | P03712: 1c5e 1tcz

(-) Related Entries Specified in the PDB File

5807 CHEMICAL SHIFTS RELATED ID: MY_001000120.1 RELATED DB: TARGETDB