Chain A from PDB Type:PROTEIN Length:227
aligned with RLUC_ECOLI | P0AA39 from UniProtKB/Swiss-Prot Length:319
Alignment length:227
102 112 122 132 142 152 162 172 182 192 202 212 222 232 242 252 262 272 282 292 302 312
RLUC_ECOLI 93 DVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR 319
SCOP domains d1v9ka_ A: Ribosomal large subunit pseudouridine synthase C, RluC SCOP domains
CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeee...eeeeee..............hhhhhhhhhh......ee........eeeeeee.hhhhhhhhhhhhhh...eeeeeeeee........ee...eeeee.....eeeee........eeeeeeee...eeeeeeee.....hhhhhhhhhh...........hhhhhhhhhhh........eeeeeeeee......eeeee...hhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------------------------------------PSI_RLU --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1v9k A 93 DVImYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGmQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVmRIEAPmDEGLKRCLQKmRNAR 319
| 102 112 122 132 142 152 162 172 182 192 202 212 222 232 242 252 262 272 282 292 | 302 | 312 |
| 172-MSE 298-MSE | 315-MSE
96-MSE 304-MSE
Chain B from PDB Type:PROTEIN Length:227
aligned with RLUC_ECOLI | P0AA39 from UniProtKB/Swiss-Prot Length:319
Alignment length:227
102 112 122 132 142 152 162 172 182 192 202 212 222 232 242 252 262 272 282 292 302 312
RLUC_ECOLI 93 DVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR 319
SCOP domains d1v9kb_ B: Ribosomal large subunit pseudouridine synthase C, RluC SCOP domains
CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeee...eeeeee..............hhhhhhhhhh......ee........eeeeeee.hhhhhhhhhhhhhh...eeeeeeeee........ee...eeeee.....eeeee........eeeeeeee...eeeeeeee.....hhhhhhhhhh...........hhhhhhhhhhh........eeeeeeeee......eeeee...hhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------------------------------------PSI_RLU --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1v9k B 93 DVImYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGmQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVmRIEAPmDEGLKRCLQKmRNAR 319
| 102 112 122 132 142 152 162 172 182 192 202 212 222 232 242 252 262 272 282 292 | 302 | 312 |
96-MSE 172-MSE 298-MSE | 315-MSE
304-MSE
Legend: |
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→ Mismatch |
(orange background) |
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→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |