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(-) Description

Title :  CRYSTAL STRUCTURE OF TT0351 PROTEIN FROM THERMUS THERMOPHILUS HB8
 
Authors :  N. Kunishima, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  09 Jan 04  (Deposition) - 18 Jan 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Lithotrophic Sulfur Oxidation, Unknown Function, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Kunishima
Crystal Structure Of Soxz Protein From Thermus Thermophilus Hb8
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SULFUR OXIDATION PROTEIN SOXZ
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS HB8
    Organism Taxid: 300852
    Strain: HB8 / ATCC 27634 / DSM 579
    Synonym: TT0351 PROTEIN, SOXZ PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1V8H)

(-) Sites  (0, 0)

(no "Site" information available for 1V8H)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1V8H)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asn A:10 -Pro A:11
2Asn B:10 -Pro B:11

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1V8H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1V8H)

(-) Exons   (0, 0)

(no "Exon" information available for 1V8H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:106
 aligned with Q5SME6_THET8 | Q5SME6 from UniProtKB/TrEMBL  Length:108

    Alignment length:106
                                    11        21        31        41        51        61        71        81        91       101      
         Q5SME6_THET8     2 PFRTIARLNPAKPKAGEEFRLQVVAQHPNEPGTRRDAEGKLIPAKYINLVEVYFEGEKVAEARPGPSTSANPLYAFKFKAEKAGTFTIKLKDTDGDTGEASVKLEL 107
               SCOP domains d1v8ha1 A:2-107 Sulfur oxidation protein SoxZ                                                              SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee........eeeeeeee.....................eeeeeeee..eeeeee..........eeeeeee....eeeeeeeee....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 1v8h A   2 PFRTIARLNPAKPKAGEEFRLQVVAQHPNEPGTRRDAEGKLIPAKYINLVEVYFEGEKVAEARPGPSTSANPLYAFKFKAEKAGTFTIKLKDTDGDTGEASVKLEL 107
                                    11        21        31        41        51        61        71        81        91       101      


Chain B from PDB  Type:PROTEIN  Length:106
 aligned with Q5SME6_THET8 | Q5SME6 from UniProtKB/TrEMBL  Length:108

    Alignment length:106
                                    11        21        31        41        51        61        71        81        91       101      
         Q5SME6_THET8     2 PFRTIARLNPAKPKAGEEFRLQVVAQHPNEPGTRRDAEGKLIPAKYINLVEVYFEGEKVAEARPGPSTSANPLYAFKFKAEKAGTFTIKLKDTDGDTGEASVKLEL 107
               SCOP domains d1v8hb_ B: Sulfur oxidation protein SoxZ                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----SoxZ-1v8hB01 B:7-105                                                                               -- Pfam domains (1)
           Pfam domains (2) -----SoxZ-1v8hB02 B:7-105                                                                               -- Pfam domains (2)
         Sec.struct. author ...eeeeee........eeeeeeee.....................eeeeeeee..eeeeee..........eeeeeee....eeeeeeeee....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 1v8h B   2 PFRTIARLNPAKPKAGEEFRLQVVAQHPNEPGTRRDAEGKLIPAKYINLVEVYFEGEKVAEARPGPSTSANPLYAFKFKAEKAGTFTIKLKDTDGDTGEASVKLEL 107
                                    11        21        31        41        51        61        71        81        91       101
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1V8H)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: E-set (290)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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    Asn A:10 - Pro A:11   [ RasMol ]  
    Asn B:10 - Pro B:11   [ RasMol ]  
 

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