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(-) Description

Title :  THE TRIMERIC STRUCTURE OF DIVALENT CATION TOLERANCE PROTEIN CUTA1 FROM THERMUS THERMOPHILUS HB8
 
Authors :  B. Bagautdinov, T. H. Tahirov, Riken Structural Genomics/Proteomi Initiative (Rsgi)
Date :  29 Nov 03  (Deposition) - 23 Dec 03  (Release) - 14 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Cuta, Copper Tolerance, Trimer, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Bagautdinov
The Structures Of The Cuta1 Proteins From Thermus Thermophilus And Pyrococcus Horikoshii: Characterization Of Metal-Binding Sites And Metal-Induced Assembly.
Acta Crystallogr. , Sect. F V. 70 404 2014
PubMed-ID: 24699729  |  Reference-DOI: 10.1107/S2053230X14003422

(-) Compounds

Molecule 1 - DIVALENT CATION TOLERANCE PROTEIN CUTA1
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CUTA
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 274

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP C:43 , GLN C:44 , TYR C:77 , THR C:78 , VAL C:79 , HOH C:1080 , HOH C:1109BINDING SITE FOR RESIDUE SO4 C 1000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1V6H)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1V6H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1V6H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1V6H)

(-) Exons   (0, 0)

(no "Exon" information available for 1V6H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:103
 aligned with CUTA_THET8 | Q7SIA8 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:103
                                    10        20        30        40        50        60        70        80        90       100   
           CUTA_THET8     1 MEEVVLITVPSEEVARTIAKALVEERLAACVNIVPGLTSIYRWQGEVVEDQELLLLVKTTTHAFPKLKERVKALHPYTVPEIVALPIAEGNREYLDWLRENTG 103
               SCOP domains d1v6ha_ A: Cut A1                                                                                       SCOP domains
               CATH domains 1v6hA00 A:1-103  [code=3.30.70.830, no name defined]                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeeee..hhhhhhhhhhhhh......eeeee..eehhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 1v6h A   1 MEEVVLITVPSEEVARTIAKALVEERLAACVNIVPGLTSIYRWQGEVVEDQELLLLVKTTTHAFPKLKERVKALHPYTVPEIVALPIAEGNREYLDWLRENTG 103
                                    10        20        30        40        50        60        70        80        90       100   


Chain B from PDB  Type:PROTEIN  Length:103
 aligned with CUTA_THET8 | Q7SIA8 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:103
                                    10        20        30        40        50        60        70        80        90       100   
           CUTA_THET8     1 MEEVVLITVPSEEVARTIAKALVEERLAACVNIVPGLTSIYRWQGEVVEDQELLLLVKTTTHAFPKLKERVKALHPYTVPEIVALPIAEGNREYLDWLRENTG 103
               SCOP domains d1v6hb_ B: Cut A1                                                                                       SCOP domains
               CATH domains 1v6hB00 B:1-103  [code=3.30.70.830, no name defined]                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeeee..hhhhhhhhhhhhh.......eeee..eehhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 1v6h B   1 MEEVVLITVPSEEVARTIAKALVEERLAACVNIVPGLTSIYRWQGEVVEDQELLLLVKTTTHAFPKLKERVKALHPYTVPEIVALPIAEGNREYLDWLRENTG 103
                                    10        20        30        40        50        60        70        80        90       100   


Chain C from PDB  Type:PROTEIN  Length:103
 aligned with CUTA_THET8 | Q7SIA8 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:103
                                    10        20        30        40        50        60        70        80        90       100   
           CUTA_THET8     1 MEEVVLITVPSEEVARTIAKALVEERLAACVNIVPGLTSIYRWQGEVVEDQELLLLVKTTTHAFPKLKERVKALHPYTVPEIVALPIAEGNREYLDWLRENTG 103
               SCOP domains d1v6hc_ C: Cut A1                                                                                       SCOP domains
               CATH domains 1v6hC00 C:1-103  [code=3.30.70.830, no name defined]                                                    CATH domains
           Pfam domains (1) -CutA1-1v6hC01 C:2-103                                                                                  Pfam domains (1)
           Pfam domains (2) -CutA1-1v6hC02 C:2-103                                                                                  Pfam domains (2)
           Pfam domains (3) -CutA1-1v6hC03 C:2-103                                                                                  Pfam domains (3)
         Sec.struct. author .eeeeeeee.hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeeee..hhhhhhhhhhhhh.......eeee..eehhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 1v6h C   1 MEEVVLITVPSEEVARTIAKALVEERLAACVNIVPGLTSIYRWQGEVVEDQELLLLVKTTTHAFPKLKERVKALHPYTVPEIVALPIAEGNREYLDWLRENTG 103
                                    10        20        30        40        50        60        70        80        90       100
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Clan: GlnB-like (50)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (CUTA_THET8 | Q7SIA8)
biological process
    GO:0010038    response to metal ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  1v6h
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CUTA_THET8 | Q7SIA8: 1nza 4zk7

(-) Related Entries Specified in the PDB File

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