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(-) Description

Title :  SOLUTION STRUCTURE OF GLIA MATURATION FACTOR-BETA FROM MUS MUSCULUS
 
Authors :  A. K. Goroncy, T. Kigawa, S. Koshiba, T. Tomizawa, N. Kobayashi, N. Tochio, M. Inoue, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  29 Nov 03  (Deposition) - 29 May 04  (Release) - 02 Feb 10  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Actin Binding Protein, Cytoskeleton, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Hormone/Growth Factor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Goroncy, S. Koshiba, N. Tochio, T. Tomizawa, M. Sato, M. Inoue, S. Watanabe, Y. Hayashizaki, A. Tanaka, T. Kigawa, S. Yokoyama
Nmr Solution Structures Of Actin Depolymerizing Factor Homology Domains.
Protein Sci. V. 18 2384 2009
PubMed-ID: 19768801  |  Reference-DOI: 10.1002/PRO.248

(-) Compounds

Molecule 1 - GLIA MATURATION FACTOR, BETA
    Chains: A
    Engineered: YES
    Expression System Plasmid: P030324-81
    Expression System Vector Type: PLASMID
    Fragment: COFILIN-ADF DOMIAN
    Gene: RIKEN CDNA 3110001H22
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: CELL-FREE PROTEIN SYNTHESIS
    Synonym: MGMF-BETA

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1V6F)

(-) Sites  (0, 0)

(no "Site" information available for 1V6F)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1V6F)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1V6F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1V6F)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADF_HPS51263 ADF-H domain profile.GMFB_MOUSE4-139  1A:10-145

(-) Exons   (0, 0)

(no "Exon" information available for 1V6F)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:151
 aligned with GMFB_MOUSE | Q9CQI3 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:151
                                  1                                                                                                                                          142   
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       | - 
           GMFB_MOUSE     - ------MSESLVVCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDERLVVLDEELEGVSPDELKDELPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTEEWLREKLGFFH---   -
               SCOP domains d1v6fa_ A: Glia maturation factor beta, GMF-beta                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -----------------Cofilin_ADF-1v6fA01 A:18-145                                                                                                    ------ Pfam domains
         Sec.struct. author ..............eehhhhhhhhhhhhh......eeeeeee.....eeeeeeeee..hhhhhhhhh.....eeeeee..ee.....ee..eeeeee.....hhhhhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------ADF_H  PDB: A:10-145 UniProt: 4-139                                                                                                     ------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v6f A   1 GSSGSSGSESLVVCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDERLVVLDEELEGVSPDELKDELPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTEEWLREKLGSGPSSG 151
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1V6F)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: ADF (44)

(-) Gene Ontology  (7, 7)

NMR Structure(hide GO term definitions)
Chain A   (GMFB_MOUSE | Q9CQI3)
molecular function
    GO:0071933    Arp2/3 complex binding    Interacting selectively and non-covalently with an Arp2/3 complex, a protein complex that contains two actin-related proteins, Arp2 and Arp3, and five novel proteins (ARPC1-5).
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0008083    growth factor activity    The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation.
biological process
    GO:0007612    learning    Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience.
    GO:0007626    locomotory behavior    The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions.
    GO:0034316    negative regulation of Arp2/3 complex-mediated actin nucleation    Any process that stops, prevents, or reduces the frequency, rate or extent of actin nucleation mediated by the Arp2/3 complex and interacting proteins.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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