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(-) Description

Title :  STAPHYLOCOCCAL SUPERANTIGEN-LIKE PROTEIN 7
 
Authors :  C. E. Naylor, D. C. Briggs, S. P. Nair, A. M. Al-Shangiti
Date :  21 Apr 04  (Deposition) - 01 Jul 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.75
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Virulence Factor, Antigen Presenting Cell, Secreted Protein, Staphylococcal Exotoxin 1, Set1 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. Al-Shangiti, C. E. Naylor, S. P. Nair, D. C. Briggs, B. Henderson, B. Chain
Structural Relationships And Cellular Tropism Of Staphylococcal Superantigen-Like Proteins
Infect. Immun. V. 72 4261 2004
PubMed-ID: 15213171  |  Reference-DOI: 10.1128/IAI.72.7.4261-4270.2004

(-) Compounds

Molecule 1 - EXOTOXIN 1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Strain: K12
    Expression System Taxid: 562
    Expression System Variant: JM109(PREP4)
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 1280
    Strain: NCTC6571
    Synonym: STAPHYLOCOCCAL SUPERANTIGEN LIKE PROTEIN 7

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1V1O)

(-) Sites  (0, 0)

(no "Site" information available for 1V1O)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1V1O)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1V1O)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1V1O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1V1O)

(-) Exons   (0, 0)

(no "Exon" information available for 1V1O)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:196
 aligned with Q9ZFS5_STAAU | Q9ZFS5 from UniProtKB/TrEMBL  Length:231

    Alignment length:196
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225      
         Q9ZFS5_STAAU    36 RVQHLHDIRDLHRYYSSESFEYSNVSGKVENYNGSNVVRFNPKDQNHQLFLLGKDKEQYKEGLQGQNVFVVQELIDPNGRLSTVGGVTKKNNKTSETNTPLFVNKVNGEDLDASIDSFLIQKEEISLKELDFKIRQQLVNNYGLYKGTSKYGKIIINLKDENKVEIDLGDKLQFERMGDVLNSKDIRGISVTINQI 231
               SCOP domains d1v1oa1 A:18-108 Exotoxin 1 (SET1, Superantigen-like protein 7)                            d1v1oa2 A:109-213 Exotoxin 1 (SET1, Superantigen-like protein 7)                                          SCOP domains
               CATH domains 1v1oA01         --------------------------------------------------------------------------1v1oA01 A:18-33,A:108-213  [code=3.10.20.120, no name defined]                                             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhh..eeeeeeee.eeee..eeeeee......eeeee..hhhhhh...eeeeeeee...ee.....eeee..ee........eeeeeeeeeee..eeeeeeeeeee...eeehhhhhhhhhhhhhhhh.........eeeeeee...eeeeee.....hhhhh..eee...eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v1o A  18 RVQHLHDIRDLHRYYSSESFEYSNVSGKVENYNGSNVVRFNPKDQNHQLFLLGKDKEQYKEGLQGQNVFVVQELIDPNGRLSTVGGVTKKNNKTSETNTPLFVNKVNGEDLDASIDSFLIQKEEISLKELDFKIRQQLVNNYGLYKGTSKYGKIIINLKDENKVEIDLGDKLQFERMGDVLNSKDIRGISVTINQI 213
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207      


Chain B from PDB  Type:PROTEIN  Length:196
 aligned with Q9ZFS5_STAAU | Q9ZFS5 from UniProtKB/TrEMBL  Length:231

    Alignment length:196
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225      
         Q9ZFS5_STAAU    36 RVQHLHDIRDLHRYYSSESFEYSNVSGKVENYNGSNVVRFNPKDQNHQLFLLGKDKEQYKEGLQGQNVFVVQELIDPNGRLSTVGGVTKKNNKTSETNTPLFVNKVNGEDLDASIDSFLIQKEEISLKELDFKIRQQLVNNYGLYKGTSKYGKIIINLKDENKVEIDLGDKLQFERMGDVLNSKDIRGISVTINQI 231
               SCOP domains d1v1ob1 B:18-108 Exotoxin 1 (SET1, Superantigen-like protein 7)                            d1v1ob2 B:109-213 Exotoxin 1 (SET1, Superantigen-like protein 7)                                          SCOP domains
               CATH domains 1v1oB01         --------------------------------------------------------------------------1v1oB01 B:18-33,B:108-213  [code=3.10.20.120, no name defined]                                             CATH domains
           Pfam domains (1) --------DUF1954-1v1oB03 B:26-108                                                           ------Stap_Strp_tox_C-1v1oB01 B:115-211                                                                -- Pfam domains (1)
           Pfam domains (2) --------DUF1954-1v1oB04 B:26-108                                                           ------Stap_Strp_tox_C-1v1oB02 B:115-211                                                                -- Pfam domains (2)
         Sec.struct. author ......hhhhhhhhhhh..eeeeeeee.eeee..eeeeee......eeee...hhhhhh...eeeeeeee...ee.....eeee..ee........eeeeeeeeeee..eeeeeeeeeee...eeehhhhhhhhhhhhhhhhh........eeeeeee...eeeeee.....hhhhh..eee...eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v1o B  18 RVQHLHDIRDLHRYYSSESFEYSNVSGKVENYNGSNVVRFNPKDQNHQLFLLGKDKEQYKEGLQGQNVFVVQELIDPNGRLSTVGGVTKKNNKTSETNTPLFVNKVNGEDLDASIDSFLIQKEEISLKELDFKIRQQLVNNYGLYKGTSKYGKIIINLKDENKVEIDLGDKLQFERMGDVLNSKDIRGISVTINQI 213
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Clan: Ant-toxin_C (48)
(-)
Clan: no clan defined [family: DUF1954] (9)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q9ZFS5_STAAU | Q9ZFS5)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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  1v1o
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9ZFS5_STAAU | Q9ZFS5: 1v1p

(-) Related Entries Specified in the PDB File

1v1p THE STRUCTURE SSL FROM STAPHYLOCOCCUS AUREUS FROM AN ORTHORHOMBIC CRYSTAL FROM