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(-) Description

Title :  HOMOLOGY MODEL OF HEMOGLOBIN BINDING PROTEIN HGBA FROM ACTINOBACILLUS PLEUROPNEUMONIAE
 
Authors :  P. D. Pawelek, J. W. Coulton
Date :  24 Feb 04  (Deposition) - 19 Mar 04  (Release) - 10 Nov 04  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Homology Modelling, Hemoglobin Receptor, Outer Membrane Proteins, Beta-Barrel, Tonb (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. D. Pawelek, J. W. Coulton
Hemoglobin-Binding Protein Hgba In The Outer Membrane Of Actinobacillus Pleuropneumoniae: Homology Modelling Reveals Regions Of Potential Interactions With Hemoglobin And Heme
J. Mol. Graph. Model. V. 23 211 2004
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HEMOGLOBIN-BINDING PROTEIN
    Chains: A
    Organism Scientific: ACTINOBACILLUS PLEUROPNEUMONIAE
    Synonym: HGBA

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1UXF)

(-) Sites  (0, 0)

(no "Site" information available for 1UXF)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1UXF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1UXF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1UXF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1UXF)

(-) Exons   (0, 0)

(no "Exon" information available for 1UXF)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:550
 aligned with Q84I43_ACTPL | Q84I43 from UniProtKB/TrEMBL  Length:948

    Alignment length:917
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       
         Q84I43_ACTPL    32 DTVIVKDGIQQQKISEIKKSAKQLAKQQVQDSRDLVRYETGVTVVETGRMGSSGYAVRGVDENRVAITVDGLHQAETLSSQGFKELFEGYGNFNNTRNSVEIETLKQATIRKGADSVRVGSGALGGAVMFETKDARDFLTEKDYHFGYKTGYSSADNQKANSLTFAGRYKNFDILALKTWRDGHELENYDYKTADGSVQGKEREKADPYSIKKDSTLIKFGYSPSDNHRFSVVADLYEKKNRGHDFSYNLKPTTYINVDEYELRHTNDKSKRQNYAFVYENFSANPLWDTLKLTYSTQKIKNRARTDDYCDGSHCKETENLAGLQLKDGKVVDRDGNQPNLGVDELGLTTITDSKGTYTEGVNLVRAYWFDCSVFDCNKSVTAYYKDYSNNITSEEVALTKTYTDEKGRKFATLDPKSKFKSILLPGSKGYTENIYTERDLDTDTKQLNLDLTKSFSLLGQEHSLEYGGSYSRTEKKMVNRGGFGATSNTQWWTKRFLGMRNNFFKGTEEVITCKNATGSDQWNGLICPNEDTFSFLIPVEAKNGSLYFADNLKANDYLSFDIGYRYDDISYKPKYVAGQTAKIPDDMLQGLFVPLPDRPTKEQIRQNAEENIKYLSRNVKYQKHSYSLAATADPFSFLRVQVKYANGFRAPTSDELYFTFKHPDFTVLPNVDLKSERAETKEAALTLHGDLGFITTSYFKTDYDNFIDLKYLGPKNLMNAFGGSATARPYQIYQNVNRQEARVNGLEISSKLNFGQLWQALEGFNASYKYTYQKGKMEGNLPLNAIQPRTSVFGLGYAHPEDKFGVDVYVTRVSAKKAEDTYNMYHSEEKAKDSYLKWRSDAYTLLDMIAYVKPWKNVTLQAGVYNLQNRKYLTWESVRSIRPFGTSNLINQATGKGLNRFTAPGRNFKLTAEVTF 948
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhh.eeeeehhhhhhh....hhhhhhhhh...ee............ee........eeee..ee..............................eeeeeeee..hhhhhhh.....eeeeeee.........eeeeeeeeee....eeeeeeeeeee......eeeeeeeeeeee..-------------------------eeeeeeeeeeee.....eeeeeeeeeeee----------------------...eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-------------------------------------------------------------------------------------------------------------------------------------.eeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeeee...--------------------------------------------------------eeeeeeeeeeeeeeeeee...eeeeeeeeeeeeeeeee.-----------------------------------------eeeeeeeeeeeeeeeee.....eeeeeeeeeeee..-------------------...eeeeeeeeeeeeeee..eeeeeeeeeeeeee---------------------------------eeeeeeeeeeeeeee........eeeeeeeeeeeee.....eee.....eeeeeeeeeeeee..eeeeeeeeeeeeeee.......-------------.eeeeeeeeeeeeeee....eeeeeeeee......-------------------------.........eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uxf A   7 DTVIVKDGIQQQKISEIKKSAKQLAKQQVQDSRDLVRYETGVTVVETGRMGSSGYAVRGVDENRVAITVDGLHQAETLSSQGFKELFEGYGNFNNTRNSVEIETLKQATIRKGADSVRVGSGALGGAVMFETKDARDFLTEKDYHFGYKTGYSSADNQKANSLTFAGRYKNFDILALKTWRDGHEL-------------------------KKDSTLIKFGYSPSDNHRFSVVADLYEKK----------------------LRHTNDKSKRQNYAFVYENFSANPLWDTLKLTYSTQKIKN-------------------------------------------------------------------------------------------------------------------------------------YTERDLDTDTKQLNLDLTKSFSLLGQEHSLEYGGSYSRTEKKMVNR--------------------------------------------------------IPVEAKNGSLYFADNLKANDYLSFDIGYRYDDISYKPKY-----------------------------------------RNVKYQKHSYSLAATADPFSFLRVQVKYANGFRAPT-------------------DLKSERAETKEAALTLHGDLGFITTSYFKTDYDN---------------------------------QEARVNGLEISSKLNFGQLWQALEGFNASYKYTYQKGKMEGNLPLNAIQPRTSVFGLGYAHPEDKFGVDVYVTRVSAKKAEDTYNM-------------WRSDAYTLLDMIAYVKPWKNVTLQAGVYNLQNRKY-------------------------LNRFTAPGRNFKLTAEVTF 923
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186     |   -         -         - |     226       236       246         -         -  |    276       286       296       306 |       -         -         -         -         -         -         -         -         -         -         -         -         -     | 446       456       466       476       486|        -         -         -         -         -       546       556       566       576     |   -         -         -         -       626       636       646       656  |      -         -  |    686       696       706     |   -         -         -       746       756       766       776       786       796       806       816       826    |    -       846       856       866       876  |      -         -       906       916       
                                                                                                                                                                                                                   192                       218                         246                    269                                    308                                                                                                                                   442                                          487                                                      544                                   582                                       624                                659                 679                              712                               746                                                                                  831           845                               879                       905
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1UXF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1UXF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1UXF)

(-) Gene Ontology  (7, 7)

Theoretical Model(hide GO term definitions)
Chain A   (Q84I43_ACTPL | Q84I43)
molecular function
    GO:0004872    receptor activity    Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
    GO:0005215    transporter activity    Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019867    outer membrane    The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.

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