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(-) Description

Title :  STRUCTURE OF THE CONSERVED DOMAIN OF ANAC, A MEMBER OF THE NAC FAMILY OF TRANSCRIPTION FACTORS
 
Authors :  H. A. Ernst, A. N. Olsen, K. Skriver, S. Larsen, L. Lo Leggio
Date :  04 Dec 03  (Deposition) - 19 Mar 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transcription Regulation, Transcription, Transcription Factor, Dna Binding, Abscisic Acid Response, Arabidopsis Thaliana, Crystal Structure, Nac Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. A. Ernst, A. N. Olsen, K. Skriver, S. Larsen, L. Lo Leggio
Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors
Embo Rep. V. 5 297 2004
PubMed-ID: 15083810  |  Reference-DOI: 10.1038/SJ.EMBOR.7400093
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NO APICAL MERISTEM PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: DNA-BINDING NAC DOMAIN, RESIDUES 1-168
    Organism Common: MOUSE-EAR CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Other Details: DICYANOAURATE DERIVATIVE
    Synonym: NAM, ANAC, ABSCISIC ACID RESPONSIVE NAC, DICYANOAURATE DERIVATIVE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1AU3Ligand/IonGOLD ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:62 , CYS B:33 , PHE A:41BINDING SITE FOR RESIDUE AU A1164
2AC2SOFTWARECYS A:33BINDING SITE FOR RESIDUE AU A1165
3AC3SOFTWARELYS A:62 , CYS B:33BINDING SITE FOR RESIDUE AU B1164

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1UT7)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ala A:124 -Pro A:125
2Ala B:124 -Pro B:125

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1UT7)

(-) PROSITE Motifs  (1, 2)

Asymmetric/Biological Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NACPS51005 NAC domain profile.NAC19_ARATH14-162
 		  2A:14-162
B:14-162

(-) Exons   (0, 0)

(no "Exon" information available for 1UT7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:147
 aligned with NAC19_ARATH | Q9C932 from UniProtKB/Swiss-Prot  Length:317

    Alignment length:166
                               1                                                                                                                                                                  
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157      
          NAC19_ARATH     - ---MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 163
               SCOP domains d1ut7a_     A: No apical meristem (NAM, ANAC)                                                                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......----.........eee..hhhhhhhhhhhhhhh.........ee.hhhhhhhhhhhhhh.....eeeeeee...-------..eee..eeeeeeeeeeeeee..eeeeeeeeeeeee......eeeeeeeeeeee....--------..eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------NAC  PDB: A:14-162 UniProt: 14-162                                                                                                                   - PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ut7 A  -3 GSHMGIQ----LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDR-------PNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPS--------DDWVLCRIYKKQ 163
                              ||  |  - |      17        27        37        47        57        67        77|       87        97       107       117       127       137     |   -    |  157      
                             -1|  4    9                                                                   78      86                                                      143      152           
                               1                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:150
 aligned with NAC19_ARATH | Q9C932 from UniProtKB/Swiss-Prot  Length:317

    Alignment length:166
                               1                                                                                                                                                                  
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157      
          NAC19_ARATH     - ---MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 163
               SCOP domains d1ut7b_ B: No apical meristem (NAM, ANAC)                                                                                                                              SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------NAM-1ut7B01 B:14-140                                                                                                           ---        ------------ Pfam domains (1)
           Pfam domains (2) ----------------NAM-1ut7B02 B:14-140                                                                                                           ---        ------------ Pfam domains (2)
         Sec.struct. author .........hhhhhh.....eee..hhhhhhhhhhhhhhhhhhhhhhhhee.hhhhhhhhhhhhhh.....eeeeeee..--------..eee..eeeeeeeeeeeeee..eeeeeeeeeeeee......eeeeeeeeeeee....--------..eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------NAC  PDB: B:14-162 UniProt: 14-162                                                                                                                   - PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ut7 B  -3 GSHMGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRD--------PNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPS--------DDWVLCRIYKKQ 163
                              ||     7        17        27        37        47        57        67        77        87        97       107       117       127       137     |   -    |  157      
                             -1|                                                                          77       86                                                      143      152           
                               1
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1UT7)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: NAM] (2)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (NAC19_ARATH | Q9C932)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0009414    response to water deprivation    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NAC19_ARATH | Q9C932: 1ut4 3swm 3swp 4dul

(-) Related Entries Specified in the PDB File

1ut4 STRUCTURE OF THE CONSERVED DOMAIN OF ANAC, A MEMBER OF THE NAC FAMILY OF TRANSCRIPTION FACTORS