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(-) Description

Title :  A NOVEL DROSOPHILA MELANOGASTER ACYLPHOSPHATASE (ACPDRO2)
 
Authors :  C. Rosano, S. Zuccotti, M. Bolognesi
Date :  03 Nov 03  (Deposition) - 27 May 04  (Release) - 19 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Acylphosphatase, Enzyme, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Zuccotti, C. Rosano, M. Ramazzotti, D. Degl'Innocenti, M. Stefani, G. Manao, M. Bolognesi
Three-Dimensional Structural Characterization Of A Novel Drosophila Melanogaster Acylphosphatase
Acta Crystallogr. , Sect. D V. 60 1177 2004
PubMed-ID: 15159593  |  Reference-DOI: 10.1107/S0907444904006808
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CG18505 PROTEIN
    Chains: A
    EC Number: 3.6.1.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Synonym: ACYLPHOSPHATASE, ACYLPHPHTASE, ACYP2, CG18505

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:79 , PHE A:80 , SER A:81 , HOH A:2084BINDING SITE FOR RESIDUE GOL A1099

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1URR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1URR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1URR)

(-) PROSITE Motifs  (2, 2)

Asymmetric/Biological Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ACYLPHOSPHATASE_3PS51160 Acylphosphatase-like domain profile.ACYP2_DROME12-102  1A:8-98
2ACYLPHOSPHATASE_1PS00150 Acylphosphatase signature 1.ACYP2_DROME17-27  1A:13-23

(-) Exons   (0, 0)

(no "Exon" information available for 1URR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:97
 aligned with ACYP2_DROME | Q9VF36 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:97
                                    15        25        35        45        55        65        75        85        95       
          ACYP2_DROME     6 VAKQIFALDFEIFGRVQGVFFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENNRIPNAKVSKAEFSQIQEIEDYTFTSFDIKH 102
               SCOP domains d1urra_ A: Acylphosphatase 2 (Cg18505)                                                            SCOP domains
               CATH domains 1urrA00 A:2-98  [code=3.30.70.100, no name defined]                                               CATH domains
               Pfam domains Acylphosphatase-1urrA01 A:2-97                                                                  - Pfam domains
         Sec.struct. author ....eeeeeeeeeee....hhhhhhhhhhhhhh.eeeeee.....eeeeeeehhhhhhhhhhhhhhh.....eeeeeee...eee.......eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------ACYLPHOSPHATASE_3  PDB: A:8-98 UniProt: 12-102                                              PROSITE (1)
                PROSITE (2) -----------ACYLPHOSPHA--------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                 1urr A   2 VAKQIFALDFEIFGRVQGVFFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENNRIPNAKVSKAEFSQIQEIEDYTFTSFDIKH  98
                                    11        21        31        41        51        61        71        81        91
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Acylphosphatase] (11)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (ACYP2_DROME | Q9VF36)
molecular function
    GO:0003998    acylphosphatase activity    Catalysis of the reaction: an acyl phosphate + H2O = a carboxylate + phosphate.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
    GO:0044237    cellular metabolic process    The chemical reactions and pathways by which individual cells transform chemical substances.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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