Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit - manually
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit - manually
Asym./Biol. Unit - manually  (Jmol Viewer)
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  CARBOXYETHYLARGININE SYNTHASE FROM STREPTOMYCES CLAVULIGERUS (SEMET STRUCTURE)
 
Authors :  M. E. C. Caines, J. M. Elkins, K. S. Hewitson, C. J. Schofield
Date :  29 Sep 03  (Deposition) - 20 Nov 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Synthase, Clavulanic Acid, Antibiotic, Lactamase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. E. C. Caines, J. M. Elkins, K. S. Hewitson, C. J. Schofield
Crystal Structure And Mechanistic Implications Of N2-(2-Carboxyethyl)Arginine Synthase, The First Enzyme In The Clavulanic Acid Biosynthesis Pathway
J. Biol. Chem. V. 279 5685 2004
PubMed-ID: 14623876  |  Reference-DOI: 10.1074/JBC.M310803200

(-) Compounds

Molecule 1 - CARBOXYETHYLARGININE SYNTHASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24A(+)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Scientific: STREPTOMYCES CLAVULIGERUS
    Organism Taxid: 1901

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 56)

Asymmetric/Biological Unit (4, 56)
No.NameCountTypeFull Name
1MG4Ligand/IonMAGNESIUM ION
2MSE40Mod. Amino AcidSELENOMETHIONINE
3SO48Ligand/IonSULFATE ION
4TPP4Ligand/IonTHIAMINE DIPHOSPHATE

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:463 , ASN A:490 , THR A:492 , TPP A:600 , HOH A:2210BINDING SITE FOR RESIDUE MG A 601
02AC2SOFTWARETYR A:271 , ARG A:414 , HIS A:415 , LEU A:495 , HOH A:2110 , HOH A:2190 , HIS B:120 , GLN B:121BINDING SITE FOR RESIDUE SO4 A 602
03AC3SOFTWAREASN A:490 , ASN A:560 , TYR A:561 , ASP A:562BINDING SITE FOR RESIDUE SO4 A 603
04AC4SOFTWAREASP B:463 , ASN B:490 , THR B:492 , TPP B:600 , HOH B:2278BINDING SITE FOR RESIDUE MG B 601
05AC5SOFTWAREHIS A:120 , GLN A:121 , TYR B:271 , ARG B:414 , HIS B:415 , LEU B:495 , HOH B:2139 , HOH B:2279 , HOH B:2280BINDING SITE FOR RESIDUE SO4 B 602
06AC6SOFTWAREASN B:490 , ASN B:560 , TYR B:561 , ASP B:562 , PHE B:563 , HOH B:2281BINDING SITE FOR RESIDUE SO4 B 603
07AC7SOFTWAREASP C:463 , ASN C:490 , THR C:492 , TPP C:600 , HOH C:2170BINDING SITE FOR RESIDUE MG C 601
08AC8SOFTWARETYR C:271 , ARG C:414 , HIS C:415 , LEU C:495 , HOH C:2148 , HIS D:120 , GLN D:121BINDING SITE FOR RESIDUE SO4 C 602
09AC9SOFTWAREASN C:490 , ASN C:560 , TYR C:561 , ASP C:562 , PHE C:563BINDING SITE FOR RESIDUE SO4 C 603
10BC1SOFTWAREASP D:463 , ASN D:490 , THR D:492 , TPP D:600 , HOH D:2188BINDING SITE FOR RESIDUE MG D 601
11BC2SOFTWAREHIS C:120 , GLN C:121 , TYR D:271 , ARG D:414 , HIS D:415 , LEU D:495 , HOH D:2098 , HOH D:2219BINDING SITE FOR RESIDUE SO4 D 602
12BC3SOFTWAREASN D:490 , ASN D:560 , TYR D:561 , ASP D:562BINDING SITE FOR RESIDUE SO4 D 603
13BC4SOFTWAREILE A:410 , GLY A:411 , PHE A:412 , PHE A:413 , SER A:436 , SER A:437 , PHE A:438 , GLY A:462 , ASP A:463 , GLY A:464 , GLY A:465 , ASN A:490 , THR A:492 , ASN A:493 , GLY A:494 , LEU A:495 , TYR A:561 , MG A:601 , HOH A:2210 , HOH A:2250 , GLU B:57 , THR B:80 , ASN B:87BINDING SITE FOR RESIDUE TPP A 600
14BC5SOFTWAREGLU A:57 , THR A:80 , ASN A:87 , ILE B:410 , GLY B:411 , PHE B:412 , PHE B:413 , SER B:436 , SER B:437 , PHE B:438 , GLY B:462 , ASP B:463 , GLY B:464 , GLY B:465 , ASN B:490 , THR B:492 , ASN B:493 , GLY B:494 , LEU B:495 , TYR B:561 , MG B:601 , HOH B:2277 , HOH B:2278BINDING SITE FOR RESIDUE TPP B 600
15BC6SOFTWAREILE C:410 , GLY C:411 , PHE C:412 , PHE C:413 , SER C:436 , PHE C:438 , GLY C:462 , ASP C:463 , GLY C:464 , GLY C:465 , ASN C:490 , THR C:492 , ASN C:493 , GLY C:494 , LEU C:495 , TYR C:561 , MG C:601 , HOH C:2170 , HOH C:2197 , GLU D:57 , THR D:80 , ASN D:87BINDING SITE FOR RESIDUE TPP C 600
16BC7SOFTWAREGLU C:57 , THR C:80 , ASN C:87 , ILE D:410 , GLY D:411 , PHE D:412 , PHE D:413 , SER D:436 , SER D:437 , PHE D:438 , GLY D:462 , ASP D:463 , GLY D:464 , GLY D:465 , ASN D:490 , THR D:492 , ASN D:493 , GLY D:494 , LEU D:495 , TYR D:561 , MG D:601 , HOH D:2188 , HOH D:2217BINDING SITE FOR RESIDUE TPP D 600

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1UPA)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Glu A:159 -Pro A:160
2Glu B:159 -Pro B:160
3Glu C:159 -Pro C:160
4Glu D:159 -Pro D:160

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1UPA)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TPP_ENZYMESPS00187 Thiamine pyrophosphate enzymes signature.CEAS_STRCL446-465
 
 
 		  4A:446-465
B:446-465
C:446-465
D:446-465

(-) Exons   (0, 0)

(no "Exon" information available for 1UPA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:558
 aligned with CEAS_STRCL | Q9LCV9 from UniProtKB/Swiss-Prot  Length:573

    Alignment length:561
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571 
           CEAS_STRCL    12 PTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVEGIDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDLLGSSEGIDTTVPNPPANTPAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLRPSMWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATASFGAKQRHDIEPLRARIAEFLADPETYEDGMRVHQVIDSMNTVMEEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGFHSNSSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRATNREELLAALRKGAELGRPFLIEVPVNYDFQPGGFGALS 572
               SCOP domains d1upaa2 A:12-197 Carboxyethylarginine synthase                                                                                                                                            d1upaa1 A:198-374 Carboxyethylarginine synthase                                                                                                                                  d1upaa3 A:375-572 Carboxyethylarginine synthase                                                                                                                                                        SCOP domains
               CATH domains 1upaA01 A:12-195  [code=3.40.50.970, no name defined]                                                                                                                                   1upaA02 A:196-359 TPP-binding domain                                                                                                                                1upaA03 A:360-572  [code=3.40.50.970, no name defined]                                                                                                                                                                CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...eeee..hhhhhh.........eeee..hhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhhh..eeeeeee.hhhhh.........hhhhhhhhhh.eeee..hhhhhhhhhhhhhhhhh......eeeeeehhhhh.......---...........eee..hhhhhhhhhhhhhhhh..eeeeehhhhhhh.hhhhhhhhhhhhh..eee..............eeee...hhhhhhh............eeeee..hhhhh.hhhhhh.....eeeeee.............eeee.hhhhhhhhhhhhh..........hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh.....eeee..hhhhhhhhhhh.......ee.........hhhhhhhhhhhhh....eeeeeehhhhhhh..hhhhhhhhh...eeeeee...hhhhhhhhhhhhh..hhhhh.....hhhhhhhhh..eeee..hhhhhhhhhhhhhh....eeeeee.....hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1upa A  12 PTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVEGIDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGmTNLSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPmSKYAVELQRPHEITDLVDSAVNAAmTEPVGPSFISLPVDLLGSSEGIDT---NPPANTPAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYmDGILNFPALQTmFAPVDLVLTVGYDYAEDLRPSmWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATASFGAKQRHDIEPLRARIAEFLADPETYEDGmRVHQVIDSmNTVmEEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQmARPDQPTFLIAGDGGFHSNSSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRATNREELLAALRKGAELGRPFLIEVPVNYDFQPGGFGALS 572
                                    21        31        41        51        61        71        81   |    91       101       111       121       131|      141       151     | 161       171       181   |   191       201       211       221       231       241       251       261       271|      281  |    291       301    |  311       321       331       341       351       361       371       381|      391   |   401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571 
                                                                                                    85-MSE                                        132-MSE                  157-MSE                 181 185                                                                                    272-MSE     284-MSE               306-MSE                                                                     382-MSE  391-MSE                                                    450-MSE                                                                                                                      
                                                                                                                                                                                                                                                                                                                                                                                                                         395-MSE                                                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:559
 aligned with CEAS_STRCL | Q9LCV9 from UniProtKB/Swiss-Prot  Length:573

    Alignment length:561
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571 
           CEAS_STRCL    12 PTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVEGIDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDLLGSSEGIDTTVPNPPANTPAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLRPSMWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATASFGAKQRHDIEPLRARIAEFLADPETYEDGMRVHQVIDSMNTVMEEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGFHSNSSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRATNREELLAALRKGAELGRPFLIEVPVNYDFQPGGFGALS 572
               SCOP domains d1upab2 B:12-197 Carboxyethylarginine synthase                                                                                                                                            d1upab1 B:198-374 Carboxyethylarginine synthase                                                                                                                                  d1upab3 B:375-572 Carboxyethylarginine synthase                                                                                                                                                        SCOP domains
               CATH domains 1upaB01 B:12-195  [code=3.40.50.970, no name defined]                                                                                                                                   1upaB02 B:196-359 TPP-binding domain                                                                                                                                1upaB03 B:360-572  [code=3.40.50.970, no name defined]                                                                                                                                                                CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...eeee..hhhhhh.........eeee..hhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhhh..eeeeeee.hhhhh.........hhhhhhhhhh.eeee..hhhhhhhhhhhhhhhhh......eeeeeehhhhh.......--............eee..hhhhhhhhhhhhhhhh..eeeeehhhhhhh.hhhhhhhhhhhhh..eee.hhhh.........eeee...hhhhhhh............eeeee..hhhhh.hhhhhh.....eeeeee.............eeee.hhhhhhhhhhhhh..........hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh.....eeee..hhhhhhhhhhh.......ee.........hhhhhhhhhhhhh....eeeeeehhhhhhh..hhhhhhhhh...eeeeee...hhhhhhhhhhhhh..hhhhh.....hhhhhhhhh..eeee..hhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1upa B  12 PTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVEGIDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGmTNLSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPmSKYAVELQRPHEITDLVDSAVNAAmTEPVGPSFISLPVDLLGSSEGIDT--PNPPANTPAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYmDGILNFPALQTmFAPVDLVLTVGYDYAEDLRPSmWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATASFGAKQRHDIEPLRARIAEFLADPETYEDGmRVHQVIDSmNTVmEEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQmARPDQPTFLIAGDGGFHSNSSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRATNREELLAALRKGAELGRPFLIEVPVNYDFQPGGFGALS 572
                                    21        31        41        51        61        71        81   |    91       101       111       121       131|      141       151     | 161       171       181  |    191       201       211       221       231       241       251       261       271|      281  |    291       301    |  311       321       331       341       351       361       371       381|      391   |   401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571 
                                                                                                    85-MSE                                        132-MSE                  157-MSE                 181  |                                                                                     272-MSE     284-MSE               306-MSE                                                                     382-MSE  391-MSE                                                    450-MSE                                                                                                                      
                                                                                                                                                                                                      184                                                                                                                                                                                                                395-MSE                                                                                                                                                                             


Chain C from PDB  Type:PROTEIN  Length:547
 aligned with CEAS_STRCL | Q9LCV9 from UniProtKB/Swiss-Prot  Length:573

    Alignment length:552
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561  
           CEAS_STRCL    12 PTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVEGIDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDLLGSSEGIDTTVPNPPANTPAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLRPSMWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATASFGAKQRHDIEPLRARIAEFLADPETYEDGMRVHQVIDSMNTVMEEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGFHSNSSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRATNREELLAALRKGAELGRPFLIEVPVNYDF 563
               SCOP domains d1upac2 C:12-197 Carboxyethylarginine synthase                                                                                                                                            d1upac1 C:198-374 Carboxyethylarginine synthase                                                                                                                                  d1upac3 C:375-563 Carboxyethylarginine synthase                                                                                                                                               SCOP domains
               CATH domains 1upaC01 C:12-195  [code=3.40.50.970, no name defined]                                                                                                                                   1upaC02 C:196-359 TPP-binding domain                                                                                                                                1upaC03 C:360-563  [code=3.40.50.970, no name defined]                                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...eeee..hhhhhh.........eeee..hhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhhh..eeeeeee.hhhhh.........hhhhhhhhhh.eeee..hhhhhhhhhhhhhhhhh......eeeeeehhhhh......-----..........eee..hhhhhhhhhhhhhhhh..eeeeehhhhhhh.hhhhhhhhhhhhh..eee..............eeee...hhhhhhh.hhhhhhhh...eeeee..hhhhh.hhhhhh.....eeeeee.............eeee.hhhhhhhhhhhhh..........hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh.....eeee..hhhhhhhhhhh.......ee.........hhhhhhhhhhhhh....eeeeeehhhhhhh..hhhhhhhhh...eeeeee...hhhhhhhhhhhhh..hhhhh.....hhhhhhhhh..eeee..hhhhhhhhhhhhhhh...eeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1upa C  12 PTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVEGIDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGmTNLSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPmSKYAVELQRPHEITDLVDSAVNAAmTEPVGPSFISLPVDLLGSSEGID-----PPANTPAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYmDGILNFPALQTmFAPVDLVLTVGYDYAEDLRPSmWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATASFGAKQRHDIEPLRARIAEFLADPETYEDGmRVHQVIDSmNTVmEEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQmARPDQPTFLIAGDGGFHSNSSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRATNREELLAALRKGAELGRPFLIEVPVNYDF 563
                                    21        31        41        51        61        71        81   |    91       101       111       121       131|      141       151     | 161       171        |-    |  191       201       211       221       231       241       251       261       271|      281  |    291       301    |  311       321       331       341       351       361       371       381|      391   |   401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561  
                                                                                                    85-MSE                                        132-MSE                  157-MSE                180   186                                                                                   272-MSE     284-MSE               306-MSE                                                                     382-MSE  391-MSE                                                    450-MSE                                                                                                             
                                                                                                                                                                                                                                                                                                                                                                                                                         395-MSE                                                                                                                                                                    


Chain D from PDB  Type:PROTEIN  Length:558
 aligned with CEAS_STRCL | Q9LCV9 from UniProtKB/Swiss-Prot  Length:573

    Alignment length:561
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571 
           CEAS_STRCL    12 PTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVEGIDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDLLGSSEGIDTTVPNPPANTPAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLRPSMWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATASFGAKQRHDIEPLRARIAEFLADPETYEDGMRVHQVIDSMNTVMEEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGFHSNSSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRATNREELLAALRKGAELGRPFLIEVPVNYDFQPGGFGALS 572
               SCOP domains d1upad2 D:12-197 Carboxyethylarginine synthase                                                                                                                                            d1upad1 D:198-374 Carboxyethylarginine synthase                                                                                                                                  d1upad3 D:375-572 Carboxyethylarginine synthase                                                                                                                                                        SCOP domains
               CATH domains 1upaD01 D:12-195  [code=3.40.50.970, no name defined]                                                                                                                                   1upaD02 D:196-359 TPP-binding domain                                                                                                                                1upaD03 D:360-572  [code=3.40.50.970, no name defined]                                                                                                                                                                CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...eeee..hhhhhh.........eeee..hhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhhh..eeeeeee.hhhhh.........hhhhhhhhhh.eeee..hhhhhhhhhhhhhhhhh......eeeeeehhhhh.......---...........eee..hhhhhhhhhhhhhhhh..eeeeehhhhhhh.hhhhhhhhhhhhh..eee..............eeee...hhhhhhh............eeeee..hhhhh.hhhhhh.....eeeeee.............eeee.hhhhhhhhhhhhh..........hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh.....eeee..hhhhhhhhhhh.......ee.........hhhhhhhhhhhhh....eeeeeehhhhhhh..hhhhhhhhh...eeeeee...hhhhhhhhhhhhh..hhhhh.....hhhhhhhhh..eeee..hhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1upa D  12 PTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVEGIDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGmTNLSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPmSKYAVELQRPHEITDLVDSAVNAAmTEPVGPSFISLPVDLLGSSEGIDT---NPPANTPAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYmDGILNFPALQTmFAPVDLVLTVGYDYAEDLRPSmWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATASFGAKQRHDIEPLRARIAEFLADPETYEDGmRVHQVIDSmNTVmEEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQmARPDQPTFLIAGDGGFHSNSSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRATNREELLAALRKGAELGRPFLIEVPVNYDFQPGGFGALS 572
                                    21        31        41        51        61        71        81   |    91       101       111       121       131|      141       151     | 161       171       181   |   191       201       211       221       231       241       251       261       271|      281  |    291       301    |  311       321       331       341       351       361       371       381|      391   |   401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571 
                                                                                                    85-MSE                                        132-MSE                  157-MSE                 181 185                                                                                    272-MSE     284-MSE               306-MSE                                                                     382-MSE  391-MSE                                                    450-MSE                                                                                                                      
                                                                                                                                                                                                                                                                                                                                                                                                                         395-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1UPA)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (CEAS_STRCL | Q9LCV9)
molecular function
    GO:0033848    N2-(2-carboxyethyl)arginine synthase activity    Catalysis of the reaction: D-glyceraldehyde 3-phosphate + L-arginine = N(2)-(2-carboxyethyl)-L-arginine + H(+) + phosphate.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0030976    thiamine pyrophosphate binding    Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    TPP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Glu A:159 - Pro A:160   [ RasMol ]  
    Glu B:159 - Pro B:160   [ RasMol ]  
    Glu C:159 - Pro C:160   [ RasMol ]  
    Glu D:159 - Pro D:160   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1upa
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  CEAS_STRCL | Q9LCV9
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  CEAS_STRCL | Q9LCV9
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CEAS_STRCL | Q9LCV9: 1upb 1upc 2iht 2ihu 2ihv

(-) Related Entries Specified in the PDB File

1upb CARBOXYETHYLARGININE SYNTHASE FROM STREPTOMYCES CLAVULIGERUS
1upc CARBOXYETHYLARGININE SYNTHASE FROM STREPTOMYCES CLAVULIGERUS