1UKP - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF SOYBEAN BETA-AMYLASE MUTANT SUBSTITUTED AT SURFACE REGION

Authors :   Y. N. Kang, M. Adachi, B. Mikami, S. Utsumi

Date :   31 Aug 03 (Deposition) - 10 Feb 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   (Alpha/Beta)8 Barrel, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. N. Kang, M. Adachi, B. Mikami, S. Utsumi
Change In The Crystal Packing Of Soybean Beta-Amylase Mutants Substituted At A Few Surface Amino Acid Residues
Protein Eng. V. 16 809 2003
PubMed-ID: 14631070 | Reference-DOI: 10.1093/PROTEIN/GZG109
(for further references see the PDB file header)

Molecule 1 - BETA-AMYLASE
	Chains	:	A, B, C, D
	EC Number	:	3.2.1.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PKK233-2
	Expression System Strain	:	JM105
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Mutation	:	YES
	Organism Common	:	SOYBEAN
	Organism Scientific	:	GLYCINE MAX
	Organism Taxid	:	3847
	Synonym	:	1,4-ALPHA-D-GLUCAN MALTOHYDROLASE

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 20)

No.	Name	Count	Type	Full Name
1	SO4	20	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 5)

No.	Name	Count	Type	Full Name
1	SO4	5	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 5)

No.	Name	Count	Type	Full Name
1	SO4	5	Ligand/Ion	SULFATE ION

Biological Unit 3 (1, 6)

No.	Name	Count	Type	Full Name
1	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 4 (1, 4)

No.	Name	Count	Type	Full Name
1	SO4	4	Ligand/Ion	SULFATE ION

Asymmetric Unit (20, 20)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TYR A:67 , SER A:160 , ASN A:164	BINDING SITE FOR RESIDUE SO4 A 2000
02	AC2	SOFTWARE	SER B:160 , ASN B:164	BINDING SITE FOR RESIDUE SO4 B 2001
03	AC3	SOFTWARE	SER C:160 , ASN C:164	BINDING SITE FOR RESIDUE SO4 C 2002
04	AC4	SOFTWARE	SER D:160 , ASN D:164	BINDING SITE FOR RESIDUE SO4 D 2003
05	AC5	SOFTWARE	ASP A:234 , HOH A:1357 , HIS B:146	BINDING SITE FOR RESIDUE SO4 A 2004
06	AC6	SOFTWARE	HIS A:146 , HOH A:1134 , ASP B:234 , GLY B:246 , HOH B:819	BINDING SITE FOR RESIDUE SO4 B 2005
07	AC7	SOFTWARE	GLY C:246 , HIS D:146 , HOH D:1172 , HOH D:1490	BINDING SITE FOR RESIDUE SO4 C 2006
08	AC8	SOFTWARE	HIS C:146 , ASP D:234 , HOH D:1445	BINDING SITE FOR RESIDUE SO4 C 2007
09	AC9	SOFTWARE	ARG A:347 , SER A:349 , HOH A:1151	BINDING SITE FOR RESIDUE SO4 A 2008
10	BC1	SOFTWARE	ARG B:347 , SER B:349 , HOH B:537 , HOH B:1425	BINDING SITE FOR RESIDUE SO4 B 2009
11	BC2	SOFTWARE	ARG C:347 , SER C:349 , HOH C:785	BINDING SITE FOR RESIDUE SO4 C 2010
12	BC3	SOFTWARE	ARG D:347 , SER D:349 , HOH D:739	BINDING SITE FOR RESIDUE SO4 D 2011
13	BC4	SOFTWARE	LYS A:291 , ARG A:376 , PHE A:414 , ASN A:455 , HIS A:456 , ALA A:457	BINDING SITE FOR RESIDUE SO4 A 2012
14	BC5	SOFTWARE	LYS B:291 , ARG B:376 , ASN B:455 , HIS B:456 , ALA B:457	BINDING SITE FOR RESIDUE SO4 B 2013
15	BC6	SOFTWARE	LYS C:291 , ARG C:376 , PHE C:414 , ASN C:455 , ALA C:457	BINDING SITE FOR RESIDUE SO4 C 2014
16	BC7	SOFTWARE	ARG D:376 , PHE D:414 , ASN D:455 , ALA D:457	BINDING SITE FOR RESIDUE SO4 D 2015
17	BC8	SOFTWARE	ASP A:387 , ALA A:388 , THR A:389 , HOH A:606	BINDING SITE FOR RESIDUE SO4 A 2016
18	BC9	SOFTWARE	ASP B:387 , ALA B:388 , THR B:389 , HOH B:648	BINDING SITE FOR RESIDUE SO4 B 2017
19	CC1	SOFTWARE	ASP C:387 , ALA C:388 , THR C:389 , HOH C:787	BINDING SITE FOR RESIDUE SO4 C 2018
20	CC2	SOFTWARE	ASP D:387 , ALA D:388 , THR D:389 , HOH D:704	BINDING SITE FOR RESIDUE SO4 D 2019

(no "SS Bond" information available for 1UKP)

Asymmetric Unit

No.	Residues
1	Phe A:200	-	Pro A:201
2	Leu A:419	-	Arg A:420
3	Phe B:200	-	Pro B:201
4	Leu B:419	-	Arg B:420
5	Phe C:200	-	Pro C:201
6	Leu C:419	-	Arg C:420
7	Phe D:200	-	Pro D:201
8	Leu D:419	-	Arg D:420

(no "SAP(SNP)/Variant" information available for 1UKP)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BETA_AMYLASE_1	PS00506	Beta-amylase active site 1.	AMYB_SOYBN	94-102	4	A:93-101 B:93-101 C:93-101 D:93-101
2	BETA_AMYLASE_2	PS00679	Beta-amylase active site 2.	AMYB_SOYBN	183-193	4	A:182-192 B:182-192 C:182-192 D:182-192

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BETA_AMYLASE_1	PS00506	Beta-amylase active site 1.	AMYB_SOYBN	94-102	1	A:93-101 - - -
2	BETA_AMYLASE_2	PS00679	Beta-amylase active site 2.	AMYB_SOYBN	183-193	1	A:182-192 - - -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BETA_AMYLASE_1	PS00506	Beta-amylase active site 1.	AMYB_SOYBN	94-102	1	- B:93-101 - -
2	BETA_AMYLASE_2	PS00679	Beta-amylase active site 2.	AMYB_SOYBN	183-193	1	- B:182-192 - -

Biological Unit 3 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BETA_AMYLASE_1	PS00506	Beta-amylase active site 1.	AMYB_SOYBN	94-102	1	- - C:93-101 -
2	BETA_AMYLASE_2	PS00679	Beta-amylase active site 2.	AMYB_SOYBN	183-193	1	- - C:182-192 -

Biological Unit 4 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BETA_AMYLASE_1	PS00506	Beta-amylase active site 1.	AMYB_SOYBN	94-102	1	- - - D:93-101
2	BETA_AMYLASE_2	PS00679	Beta-amylase active site 2.	AMYB_SOYBN	183-193	1	- - - D:182-192

(no "Exon" information available for 1UKP)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:490
 aligned with AMYB_SOYBN | P10538 from UniProtKB/Swiss-Prot  Length:496

    Alignment length:490
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496
           AMYB_SOYBN     7 NMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLKPSAPKIPIEVLLEATKPTLPFPWLPETDMKVDG 496
               SCOP domains d1ukpa_ A: beta-Amylase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 1ukpA00 A:6-495 Glycosidases                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..eeee.............hhhhhhhhhhhhhhh...eeeeeeehhhhh........hhhhhhhhhhhhhh..eeeeeee................hhhhhhhhhhh...eee.....eeeeee.hhhh........hhhhhhhhhhhhhhhhhhhhhhh..eeeeee..hhhhh......hhhhh............hhhhhhhhhhhhhhh................hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee............hhhhhhhh.........hhhhhhhhhh...eeee.....hhhhhhhhhh.hhhhhhhhhhhhhhhh...eeee......hhhhhhhhhhhhh................eee........hhhhhhhhhhhhhhhh.......hhhhhh.............hhhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------BETA_AMYL--------------------------------------------------------------------------------BETA_AMYLAS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ukp A   6 NMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLSPSAPKIPIEVLLEATKPTRPFPWLDETDMKVDG 495
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495

Chain B from PDB  Type:PROTEIN  Length:490
 aligned with AMYB_SOYBN | P10538 from UniProtKB/Swiss-Prot  Length:496

    Alignment length:490
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496
           AMYB_SOYBN     7 NMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLKPSAPKIPIEVLLEATKPTLPFPWLPETDMKVDG 496
               SCOP domains d1ukpb_ B: beta-Amylase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 1ukpB00 B:6-495 Glycosidases                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..eeee.............hhhhhhhhhhhhhhh...eeeeeeehhhhh........hhhhhhhhhhhhhh..eeeeeee................hhhhhhhhhhh...eee.....eeeeee.hhhh........hhhhhhhhhhhhhhhhhhhhhhh..eeeeee..hhhhh......hhhhh............hhhhhhhhhhhhhhh................hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee............hhhhhhhh.........hhhhhhhhhh...eeee.....hhhhhhhhhh.hhhhhhhhhhhhhhhh...eeee......hhhhhhhhhhhhh...............eeee...hhhhhhhhhhhhhhhhhhhhh.......hhhhhh.............hhhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------BETA_AMYL--------------------------------------------------------------------------------BETA_AMYLAS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ukp B   6 NMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLSPSAPKIPIEVLLEATKPTRPFPWLDETDMKVDG 495
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495

Chain C from PDB  Type:PROTEIN  Length:490
 aligned with AMYB_SOYBN | P10538 from UniProtKB/Swiss-Prot  Length:496

    Alignment length:490
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496
           AMYB_SOYBN     7 NMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLKPSAPKIPIEVLLEATKPTLPFPWLPETDMKVDG 496
               SCOP domains d1ukpc_ C: beta-Amylase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 1ukpC00 C:6-495 Glycosidases                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..eeee.............hhhhhhhhhhhhhhh...eeeeeeehhhhh........hhhhhhhhhhhhhh..eeeeeee................hhhhhhhhhhh...eee.....eeeeee.hhhh........hhhhhhhhhhhhhhhhhhhhhhh..eeeeee..hhhhh......hhhhh............hhhhhhhhhhhhhhh................hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee............hhhhhhhh.........hhhhhhhhhh...eeee.....hhhhhhhhhh.hhhhhhhhhhhhhhhh...eeee......hhhhhhhhhhhhh................eee...hhhhhhhhhhhhhhhhhhhhh.......hhhhhh.............hhhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------BETA_AMYL--------------------------------------------------------------------------------BETA_AMYLAS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ukp C   6 NMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLSPSAPKIPIEVLLEATKPTRPFPWLDETDMKVDG 495
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495

Chain D from PDB  Type:PROTEIN  Length:490
 aligned with AMYB_SOYBN | P10538 from UniProtKB/Swiss-Prot  Length:496

    Alignment length:490
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496
           AMYB_SOYBN     7 NMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLKPSAPKIPIEVLLEATKPTLPFPWLPETDMKVDG 496
               SCOP domains d1ukpd_ D: beta-Amylase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 1ukpD00 D:6-495 Glycosidases                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CATH domains
           Pfam domains (1) ---------Glyco_hydro_14-1ukpD01 D:15-437                                                                                                                                                                                                                                                                                                                                                                                                        ---------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ---------Glyco_hydro_14-1ukpD02 D:15-437                                                                                                                                                                                                                                                                                                                                                                                                        ---------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ---------Glyco_hydro_14-1ukpD03 D:15-437                                                                                                                                                                                                                                                                                                                                                                                                        ---------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ---------Glyco_hydro_14-1ukpD04 D:15-437                                                                                                                                                                                                                                                                                                                                                                                                        ---------------------------------------------------------- Pfam domains (4)
         Sec.struct. author hhhhhh..eeee.............hhhhhhhhhhhhhhh...eeeeeeehhhhh........hhhhhhhhhhhhhh..eeeeeee................hhhhhhhhhhh...eee.....eeeeee.hhhh........hhhhhhhhhhhhhhhhhhhhhhh..eeeeee..hhhhh......hhhhh............hhhhhhhhhhhhhhh................hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee............hhhhhhhh.........hhhhhhhhhh...eeee.....hhhhhhhhhh.hhhhhhhhhhhhhhhh...eeee......hhhhhhhhhhhhh...............eeee........hhhhhhhhhhhhhhhh.......hhhhhh.............hhhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------BETA_AMYL--------------------------------------------------------------------------------BETA_AMYLAS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ukp D   6 NMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLSPSAPKIPIEVLLEATKPTRPFPWLDETDMKVDG 495
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: (Trans)glycosidases (1191)

Family: Amylase, catalytic domain (385)

Protein domain: beta-Amylase (20)

Soybean (Glycine max) [TaxId: 3847] (18)

1a	d1ukpa_	A:
1b	d1ukpb_	B:
1c	d1ukpc_	C:
1d	d1ukpd_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Barrel (2994)

Topology: TIM Barrel (2806)

Homologous Superfamily: Glycosidases (843)

Soybean (Glycine max) (20)

1a	1ukpA00	A:6-495
1b	1ukpB00	B:6-495
1c	1ukpC00	C:6-495
1d	1ukpD00	D:6-495

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Glyco_hydro_tim (488)

Family: Glyco_hydro_14 (16)

Glycine max (Soybean) (Glycine hispida) (12)

1a	Glyco_hydro_14-1ukpD01	D:15-437
1b	Glyco_hydro_14-1ukpD02	D:15-437
1c	Glyco_hydro_14-1ukpD03	D:15-437
1d	Glyco_hydro_14-1ukpD04	D:15-437

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (AMYB_SOYBN | P10538)

molecular function
	GO:0016161	beta-amylase activity	Catalysis of the reaction: (1,4-alpha-D-glucosyl)(n+1) + H2O = (1,4-alpha-D-glucosyl)(n-1) + alpha-maltose. This reaction is the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides so as to remove successive maltose units from the non-reducing ends of the chains.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0000272	polysaccharide catabolic process	The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.

Asymmetric Unit
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	Cis Peptide Bonds
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	1ukp
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	AMYB_SOYBN \| P10538
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	AMYB_SOYBN \| P10538
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1bfn	RECOMBINANT SOYBEAN BETA-AMYLASE COMPLEXED WITH BETA- CYCLODEXTRIN
1bya	SOYBEAN BETA-AMYLASE (APO FORM)
1byb	SOYBEAN BETA-AMYLASE REACTED WITH 200MM MALTOSE AND COMPLEXED WITH MALTOTETRAOSE
1byc	SOYBEAN BETA-AMYLASE REACTED WITH 8MM MALTOSE AND COMPLEXED WITH MALTOTETRAOSE
1byd	SOYBEAN BETA-AMYLASE REACTED WITH 100MM MALTAL AND COMPLEXED WITH 2-DEOXYMALTOSE
1fa2	SWEET POTATO BETA-AMYLASE
1uko	SOYBEAN BETA-AMYLASE D374Y, L481R, P487D MUTANT

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 20)

Sites (20, 20)

SS Bonds (0, 0)

Cis Peptide Bonds (8, 8)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 8)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 4)

CATH Domains (1, 4)

Pfam Domains (1, 4)

Gene Ontology (6, 6)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File