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(-) Description

Title :  CRYSTAL STRUCTURE OF ASPERGILLUS NIGER ESTA
 
Authors :  Y. Bourne, A. A. Hasper, H. Chahinian, M. Juin, L. H. De Graaff, P. March
Date :  19 Aug 03  (Deposition) - 27 Jul 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Esterase, Fungi, A/B Hydrolase Fold, Acetylcholinesterase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Bourne, A. A. Hasper, H. Chahinian, M. Juin, L. H. De Graaff, P. Marchot
Aspergillus Niger Protein Esta Defines A New Class Of Funga Esterases Within The Alpha/Beta Hydrolase Fold Superfamily Of Proteins
Structure V. 12 677 2004
PubMed-ID: 15062090  |  Reference-DOI: 10.1016/J.STR.2004.03.005

(-) Compounds

Molecule 1 - ESTA
    Chains: A, B
    Engineered: YES
    Expression System: ASPERGILLUS NIGER
    Expression System Plasmid: PIM4421-15
    Expression System Strain: NW128
    Expression System Taxid: 5061
    Expression System Vector Type: PLASMID
    Gene: ESTA
    Organism Scientific: ASPERGILLUS NIGER
    Organism Taxid: 5061
    Synonym: ESTERASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 27)

Asymmetric Unit (5, 27)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2EDO4Ligand/Ion1,2-ETHANEDIOL
3MAN6Ligand/IonALPHA-D-MANNOSE
4NAG14Ligand/IonN-ACETYL-D-GLUCOSAMINE
5SO42Ligand/IonSULFATE ION
Biological Unit 1 (4, 14)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO3Ligand/Ion1,2-ETHANEDIOL
3MAN3Ligand/IonALPHA-D-MANNOSE
4NAG7Ligand/IonN-ACETYL-D-GLUCOSAMINE
5SO41Ligand/IonSULFATE ION
Biological Unit 2 (4, 12)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MAN3Ligand/IonALPHA-D-MANNOSE
4NAG7Ligand/IonN-ACETYL-D-GLUCOSAMINE
5SO41Ligand/IonSULFATE ION

(-) Sites  (27, 27)

Asymmetric Unit (27, 27)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:72 , LEU A:75 , GLN A:76 , NAG A:1502 , HOH A:3354BINDING SITE FOR RESIDUE NAG A 1501
02AC2SOFTWARENAG A:1501BINDING SITE FOR RESIDUE NAG A 1502
03AC3SOFTWAREGLU A:47 , TYR A:81 , ASN A:138 , THR A:140 , NAG A:608 , EDO A:1922 , HOH A:2905 , HOH A:3180BINDING SITE FOR RESIDUE NAG A 609
04AC4SOFTWARELEU A:41 , GLU A:42 , ALA A:43 , NAG A:609 , MAN A:1602 , HOH A:3169 , HOH A:3174 , HOH A:3218 , HOH A:3290BINDING SITE FOR RESIDUE NAG A 608
05AC5SOFTWARENAG A:608 , MAN A:1601 , MAN A:1603BINDING SITE FOR RESIDUE MAN A 1602
06AC6SOFTWAREMAN A:1602BINDING SITE FOR RESIDUE MAN A 1601
07AC7SOFTWAREMAN A:1602BINDING SITE FOR RESIDUE MAN A 1603
08AC8SOFTWAREASN A:345 , ARG A:383BINDING SITE FOR RESIDUE NAG A 1701
09AC9SOFTWARETYR A:465 , ASN A:511 , NAG A:1802BINDING SITE FOR RESIDUE NAG A 1801
10BC1SOFTWARENAG A:1801BINDING SITE FOR RESIDUE NAG A 1802
11BC2SOFTWAREARG A:184 , ARG A:188 , TYR A:223 , HOH A:3078 , LYS B:226BINDING SITE FOR RESIDUE SO4 A 2901
12BC3SOFTWARESER A:22 , HIS A:23 , HIS A:475 , HOH A:3001BINDING SITE FOR RESIDUE CL A 2902
13BC4SOFTWAREGLY A:127 , GLY A:128 , SER A:210 , ALA A:211 , PHE A:342 , HOH A:3024 , HOH A:3286BINDING SITE FOR RESIDUE EDO A 1902
14BC5SOFTWAREGLN A:141 , NAG A:609 , HOH A:2911BINDING SITE FOR RESIDUE EDO A 1922
15BC6SOFTWAREALA A:468 , ILE A:469 , VAL A:472 , GLN A:509 , THR A:510 , ASN A:511 , ASP A:512 , THR A:513 , HOH A:2981 , HOH A:3166 , HOH A:3508BINDING SITE FOR RESIDUE EDO A 1932
16BC7SOFTWAREASN B:259BINDING SITE FOR RESIDUE NAG B 1951
17BC8SOFTWAREASN B:72 , LEU B:75 , GLN B:76BINDING SITE FOR RESIDUE NAG B 1551
18BC9SOFTWARELEU B:41 , GLU B:47 , TYR B:81 , ASN B:138 , THR B:140 , NAG B:1658 , HOH B:3020 , HOH B:3288 , HOH B:3387 , HOH B:3394BINDING SITE FOR RESIDUE NAG B 1659
19CC1SOFTWARELEU B:41 , GLU B:42 , ALA B:43 , MAN B:1652 , NAG B:1659 , HOH B:3162 , HOH B:3446BINDING SITE FOR RESIDUE NAG B 1658
20CC2SOFTWAREMAN B:1651 , MAN B:1653 , NAG B:1658BINDING SITE FOR RESIDUE MAN B 1652
21CC3SOFTWAREMAN B:1652BINDING SITE FOR RESIDUE MAN B 1651
22CC4SOFTWAREMAN B:1652BINDING SITE FOR RESIDUE MAN B 1653
23CC5SOFTWAREASN B:345 , ARG B:383 , ALA B:385BINDING SITE FOR RESIDUE NAG B 1751
24CC6SOFTWARETYR B:465 , ASN B:511 , NAG B:1852 , HOH B:3304BINDING SITE FOR RESIDUE NAG B 1851
25CC7SOFTWARENAG B:1851BINDING SITE FOR RESIDUE NAG B 1852
26CC8SOFTWARELYS A:226 , ARG B:184 , ARG B:188 , TYR B:223 , HOH B:3185BINDING SITE FOR RESIDUE SO4 B 2951
27CC9SOFTWAREGLY B:127 , GLY B:128 , SER B:210 , ALA B:211 , TRP B:301 , PHE B:342 , HOH B:3079BINDING SITE FOR RESIDUE EDO B 1912

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:85 -A:101
2A:263 -A:272
3A:402 -A:526
4B:85 -B:101
5B:263 -B:272
6B:402 -B:526

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ser A:296 -Pro A:297
2Ser B:296 -Pro B:297

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1UKC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1UKC)

(-) Exons   (0, 0)

(no "Exon" information available for 1UKC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:517
 aligned with Q6ED33_ASPNG | Q6ED33 from UniProtKB/TrEMBL  Length:538

    Alignment length:517
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       
         Q6ED33_ASPNG    22 SHNAQPVINLGYARYQGVRLEAGVDEFLGMRYASPPIGDLRFRAPQDPPANQTLQSATEYGPICIGLDEEESPGDISEDCLFINVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQNGDLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQRTVSEMEFQFERFVNDTGCSSARDSLECLREQDIATIQKGNTGSPFPGGSSSPLPDWYFLPVTDGSLVPDELYNAFDAGNFIKVPVLVGDDTDEGSNFAYNASSSADVSRFFKNNYPNLTSQQLNEINQVYPRGKLLPRHAAYFGASSAAYGDATFTCPGNHVASSAARYLPNSVWNYRVNIIDESNIAGGIGVPHTFELPAIFGAGSTGTLSSDSSYLTYNAAIIPVTMHYFISFVQTLNPNTYRYATAPEWNTWGNGQRLRLQTNDTAMEAVPESSLQDCAFWKSLTVPMEV 538
               SCOP domains d1ukca_ A: Esterase EstA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1ukcA00 A:22-538  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee....eee.ee....eeeeeeee.....hhhhh.............ee......ee...........ee....eeeeeee........eeeeeee..............hhhhhhhh....eeeee...hhhhhhh.hhhhhhh...hhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeehhhhhhhhhhhhhhhh.......eeeee.........hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.............................hhhhhhhhh......eeeeee.hhhhhh.....hhhhhhhhhhhhh...hhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhh........hhhhhhh..........hhhhh...hhhhhhhhhhhhhhhhh...................eeeee.....eeee.hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ukc A  22 SHNAQPVINLGYARYQGVRLEAGVDEFLGMRYASPPIGDLRFRAPQDPPANQTLQSATEYGPICIGLDEEESPGDISEDCLFINVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQNGDLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQRTVSEMEFQFERFVNDTGCSSARDSLECLREQDIATIQKGNTGSPFPGGSSSPLPDWYFLPVTDGSLVPDELYNAFDAGNFIKVPVLVGDDTDEGSNFAYNASSSADVSRFFKNNYPNLTSQQLNEINQVYPRGKLLPRHAAYFGASSAAYGDATFTCPGNHVASSAARYLPNSVWNYRVNIIDESNIAGGIGVPHTFELPAIFGAGSTGTLSSDSSYLTYNAAIIPVTMHYFISFVQTLNPNTYRYATAPEWNTWGNGQRLRLQTNDTAMEAVPESSLQDCAFWKSLTVPMEV 538
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       


Chain B from PDB  Type:PROTEIN  Length:513
 aligned with Q6ED33_ASPNG | Q6ED33 from UniProtKB/TrEMBL  Length:538

    Alignment length:513
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535   
         Q6ED33_ASPNG    26 QPVINLGYARYQGVRLEAGVDEFLGMRYASPPIGDLRFRAPQDPPANQTLQSATEYGPICIGLDEEESPGDISEDCLFINVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQNGDLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQRTVSEMEFQFERFVNDTGCSSARDSLECLREQDIATIQKGNTGSPFPGGSSSPLPDWYFLPVTDGSLVPDELYNAFDAGNFIKVPVLVGDDTDEGSNFAYNASSSADVSRFFKNNYPNLTSQQLNEINQVYPRGKLLPRHAAYFGASSAAYGDATFTCPGNHVASSAARYLPNSVWNYRVNIIDESNIAGGIGVPHTFELPAIFGAGSTGTLSSDSSYLTYNAAIIPVTMHYFISFVQTLNPNTYRYATAPEWNTWGNGQRLRLQTNDTAMEAVPESSLQDCAFWKSLTVPMEV 538
               SCOP domains d1ukcb_ B: Esterase EstA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains 1ukcB00 B:26-538  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CATH domains
           Pfam domains (1) COesterase-1ukcB01 B:26-529                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             --------- Pfam domains (1)
           Pfam domains (2) COesterase-1ukcB02 B:26-529                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             --------- Pfam domains (2)
         Sec.struct. author ..eee....eee.ee....eeeeeeee.....hhhhh............eee......ee...........ee....eeeeeee........eeeeeee..............hhhhhhhh....eeeee...hhhhhhh.hhhhhhh...hhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeehhhhhhhhhhhhhhhh.......eeeee.........hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.............................hhhhhhhhh......eeeeee.hhhhhh.....hhhhhhhhhhhhh...hhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhh........hhhhhhh..........hhhhh...hhhhhhhhhhhhhhhhh...................eeeee.....eeee.hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ukc B  26 QPVINLGYARYQGVRLEAGVDEFLGMRYASPPIGDLRFRAPQDPPANQTLQSATEYGPICIGLDEEESPGDISEDCLFINVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQNGDLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQRTVSEMEFQFERFVNDTGCSSARDSLECLREQDIATIQKGNTGSPFPGGSSSPLPDWYFLPVTDGSLVPDELYNAFDAGNFIKVPVLVGDDTDEGSNFAYNASSSADVSRFFKNNYPNLTSQQLNEINQVYPRGKLLPRHAAYFGASSAAYGDATFTCPGNHVASSAARYLPNSVWNYRVNIIDESNIAGGIGVPHTFELPAIFGAGSTGTLSSDSSYLTYNAAIIPVTMHYFISFVQTLNPNTYRYATAPEWNTWGNGQRLRLQTNDTAMEAVPESSLQDCAFWKSLTVPMEV 538
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: AB_hydrolase (347)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q6ED33_ASPNG | Q6ED33)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

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