1UC3 - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HEMOGLOBINI FROM RIVER LAMPREY

Authors :   M. Seki, M. Yao, Y. Yazawa, I. Tanaka

Date :   08 Apr 03 (Deposition) - 29 Apr 03 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)
Biol. Unit 4: G,H  (1x)
Biol. Unit 5: I,J  (1x)
Biol. Unit 6: K,L  (1x)

Keywords :   Globin-Fold, Oxygen Storage/Transport Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Seki, M. Yao, Y. Yazawa, I. Tanaka
Crystal Structure Analysis Of River Lamprey Hemoglobini
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - GLOBIN
	Chains	:	A, B, C, D, E, F, G, H, I, J, K, L
	Organism Common	:	EUROPEAN RIVER LAMPREY
	Organism Scientific	:	LAMPETRA FLUVIATILIS
	Organism Taxid	:	7748
	Synonym	:	HEMOGLOBINI

		1	2	3	4	5	6	7	8	9	10	11	12
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J	K	L
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:					E	F
Biological Unit 4 (1x)	:							G	H
Biological Unit 5 (1x)	:									I	J
Biological Unit 6 (1x)	:											K	L

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 12)

No.	Name	Count	Type	Full Name
1	HEM	12	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 3 (1, 2)

No.	Name	Count	Type	Full Name
1	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 4 (1, 2)

No.	Name	Count	Type	Full Name
1	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 5 (1, 2)

No.	Name	Count	Type	Full Name
1	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 6 (1, 2)

No.	Name	Count	Type	Full Name
1	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PHE A:51 , PHE A:52 , LYS A:54 , HIS A:73 , ARG A:76 , ALA A:80 , LYS A:104 , HIS A:105 , PHE A:109 , VAL A:111 , TYR A:115 , PHE A:116 , LEU A:119 , LEU A:145 , HOH A:159 , HOH A:161 , HOH A:162	BINDING SITE FOR RESIDUE HEM A 150
02	AC2	SOFTWARE	PHE B:51 , PHE B:52 , LYS B:54 , HIS B:73 , ARG B:76 , ALA B:80 , LEU B:101 , LYS B:104 , HIS B:105 , PHE B:109 , VAL B:111 , TYR B:115 , PHE B:116 , LEU B:119 , LEU B:145 , HOH B:188	BINDING SITE FOR RESIDUE HEM B 150
03	AC3	SOFTWARE	PHE C:51 , PHE C:52 , LYS C:54 , HIS C:73 , ARG C:76 , ALA C:80 , LYS C:104 , HIS C:105 , PHE C:109 , VAL C:111 , TYR C:115 , PHE C:116 , LEU C:119 , LEU C:145 , HOH C:166 , HOH C:172 , HOH C:211	BINDING SITE FOR RESIDUE HEM C 150
04	AC4	SOFTWARE	PHE D:51 , PHE D:52 , LYS D:54 , HIS D:73 , ARG D:76 , ALA D:80 , LYS D:104 , HIS D:105 , PHE D:109 , VAL D:111 , TYR D:115 , PHE D:116 , LEU D:119 , LEU D:145 , HOH D:168 , HOH D:169 , HOH D:212	BINDING SITE FOR RESIDUE HEM D 150
05	AC5	SOFTWARE	PHE E:51 , PHE E:52 , LYS E:54 , HIS E:73 , ARG E:76 , ILE E:77 , ALA E:80 , LEU E:101 , LYS E:104 , HIS E:105 , PHE E:109 , TYR E:115 , PHE E:116 , LEU E:119 , LEU E:145 , HOH E:176 , HOH E:192 , HOH E:232	BINDING SITE FOR RESIDUE HEM E 150
06	AC6	SOFTWARE	PHE F:51 , PHE F:52 , LYS F:54 , HIS F:73 , ARG F:76 , LYS F:104 , HIS F:105 , PHE F:109 , VAL F:111 , TYR F:115 , PHE F:116 , LEU F:119 , LEU F:145 , HOH F:182 , HOH F:188 , HOH F:190	BINDING SITE FOR RESIDUE HEM F 150
07	AC7	SOFTWARE	PHE G:51 , PHE G:52 , LYS G:54 , HIS G:73 , ARG G:76 , ALA G:80 , LEU G:101 , LYS G:104 , HIS G:105 , PHE G:109 , VAL G:111 , TYR G:115 , PHE G:116 , LEU G:119 , LEU G:145 , HOH G:165 , HOH G:171 , HOH G:184	BINDING SITE FOR RESIDUE HEM G 150
08	AC8	SOFTWARE	PHE H:51 , PHE H:52 , LYS H:54 , HIS H:73 , ARG H:76 , ALA H:80 , LEU H:101 , LYS H:104 , HIS H:105 , PHE H:109 , VAL H:111 , TYR H:115 , PHE H:116 , LEU H:119 , LEU H:145 , HOH H:168	BINDING SITE FOR RESIDUE HEM H 150
09	AC9	SOFTWARE	PHE I:51 , PHE I:52 , LYS I:54 , HIS I:73 , ARG I:76 , LEU I:101 , LYS I:104 , HIS I:105 , PHE I:109 , TYR I:115 , PHE I:116 , LEU I:119 , LEU I:145 , HOH I:182 , HOH I:220	BINDING SITE FOR RESIDUE HEM I 150
10	BC1	SOFTWARE	PHE J:51 , PHE J:52 , LYS J:54 , HIS J:73 , ARG J:76 , ALA J:80 , LEU J:101 , LYS J:104 , HIS J:105 , PHE J:109 , VAL J:111 , TYR J:115 , PHE J:116 , LEU J:119 , LEU J:145 , HOH J:163 , HOH J:207 , HOH J:213 , HOH J:219	BINDING SITE FOR RESIDUE HEM J 150
11	BC2	SOFTWARE	PHE K:51 , PHE K:52 , LYS K:54 , HIS K:73 , ARG K:76 , LEU K:101 , LYS K:104 , HIS K:105 , PHE K:109 , VAL K:111 , TYR K:115 , PHE K:116 , LEU K:119 , HOH K:171 , HOH K:208	BINDING SITE FOR RESIDUE HEM K 150
12	BC3	SOFTWARE	PHE L:51 , PHE L:52 , LYS L:54 , HIS L:73 , ARG L:76 , ALA L:80 , LEU L:101 , LYS L:104 , HIS L:105 , PHE L:109 , VAL L:111 , TYR L:115 , PHE L:116 , LEU L:119 , LEU L:145 , HOH L:168 , HOH L:191	BINDING SITE FOR RESIDUE HEM L 150

(no "SS Bond" information available for 1UC3)

(no "Cis Peptide Bond" information available for 1UC3)

(no "SAP(SNP)/Variant" information available for 1UC3)

Asymmetric Unit (1, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	GLB_LAMFL	10-150	12	A:9-149 B:9-149 C:9-149 D:9-149 E:9-149 F:9-149 G:9-149 H:9-149 I:9-149 J:9-149 K:9-149 L:9-149

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	GLB_LAMFL	10-150	2	A:9-149 B:9-149 - - - - - - - - - -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	GLB_LAMFL	10-150	2	- - C:9-149 D:9-149 - - - - - - - -

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	GLB_LAMFL	10-150	2	- - - - E:9-149 F:9-149 - - - - - -

Biological Unit 4 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	GLB_LAMFL	10-150	2	- - - - - - G:9-149 H:9-149 - - - -

Biological Unit 5 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	GLB_LAMFL	10-150	2	- - - - - - - - I:9-149 J:9-149 - -

Biological Unit 6 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	GLB_LAMFL	10-150	2	- - - - - - - - - - K:9-149 L:9-149

(no "Exon" information available for 1UC3)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:149
 aligned with GLB_LAMFL | P02207 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
            GLB_LAMFL     2 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d1uc3a_ A: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 1uc3A00 A:1-149 Globins                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: A:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uc3 A   1 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain B from PDB  Type:PROTEIN  Length:149
 aligned with GLB_LAMFL | P02207 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
            GLB_LAMFL     2 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d1uc3b_ B: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 1uc3B00 B:1-149 Globins                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: B:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uc3 B   1 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain C from PDB  Type:PROTEIN  Length:149
 aligned with GLB_LAMFL | P02207 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
            GLB_LAMFL     2 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d1uc3c_ C: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 1uc3C00 C:1-149 Globins                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: C:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uc3 C   1 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain D from PDB  Type:PROTEIN  Length:149
 aligned with GLB_LAMFL | P02207 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
            GLB_LAMFL     2 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d1uc3d_ D: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 1uc3D00 D:1-149 Globins                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: D:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uc3 D   1 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain E from PDB  Type:PROTEIN  Length:149
 aligned with GLB_LAMFL | P02207 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
            GLB_LAMFL     2 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d1uc3e_ E: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 1uc3E00 E:1-149 Globins                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: E:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uc3 E   1 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain F from PDB  Type:PROTEIN  Length:149
 aligned with GLB_LAMFL | P02207 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
            GLB_LAMFL     2 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d1uc3f_ F: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 1uc3F00 F:1-149 Globins                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: F:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uc3 F   1 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain G from PDB  Type:PROTEIN  Length:149
 aligned with GLB_LAMFL | P02207 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
            GLB_LAMFL     2 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d1uc3g_ G: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 1uc3G00 G:1-149 Globins                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: G:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uc3 G   1 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain H from PDB  Type:PROTEIN  Length:149
 aligned with GLB_LAMFL | P02207 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
            GLB_LAMFL     2 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d1uc3h_ H: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 1uc3H00 H:1-149 Globins                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: H:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uc3 H   1 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain I from PDB  Type:PROTEIN  Length:149
 aligned with GLB_LAMFL | P02207 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
            GLB_LAMFL     2 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d1uc3i_ I: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 1uc3I00 I:1-149 Globins                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: I:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uc3 I   1 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain J from PDB  Type:PROTEIN  Length:149
 aligned with GLB_LAMFL | P02207 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
            GLB_LAMFL     2 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d1uc3j_ J: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 1uc3J00 J:1-149 Globins                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: J:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uc3 J   1 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain K from PDB  Type:PROTEIN  Length:149
 aligned with GLB_LAMFL | P02207 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
            GLB_LAMFL     2 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d1uc3k_ K: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 1uc3K00 K:1-149 Globins                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: K:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uc3 K   1 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain L from PDB  Type:PROTEIN  Length:149
 aligned with GLB_LAMFL | P02207 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
            GLB_LAMFL     2 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d1uc3l_ L: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 1uc3L00 L:1-149 Globins                                                                                                                               CATH domains
           Pfam domains (1) --------------Globin-1uc3L01 L:15-124                                                                                       ------------------------- Pfam domains (1)
           Pfam domains (2) --------------Globin-1uc3L02 L:15-124                                                                                       ------------------------- Pfam domains (2)
           Pfam domains (3) --------------Globin-1uc3L03 L:15-124                                                                                       ------------------------- Pfam domains (3)
           Pfam domains (4) --------------Globin-1uc3L04 L:15-124                                                                                       ------------------------- Pfam domains (4)
           Pfam domains (5) --------------Globin-1uc3L05 L:15-124                                                                                       ------------------------- Pfam domains (5)
           Pfam domains (6) --------------Globin-1uc3L06 L:15-124                                                                                       ------------------------- Pfam domains (6)
           Pfam domains (7) --------------Globin-1uc3L07 L:15-124                                                                                       ------------------------- Pfam domains (7)
           Pfam domains (8) --------------Globin-1uc3L08 L:15-124                                                                                       ------------------------- Pfam domains (8)
           Pfam domains (9) --------------Globin-1uc3L09 L:15-124                                                                                       ------------------------- Pfam domains (9)
          Pfam domains (10) --------------Globin-1uc3L10 L:15-124                                                                                       ------------------------- Pfam domains (10)
          Pfam domains (11) --------------Globin-1uc3L11 L:15-124                                                                                       ------------------------- Pfam domains (11)
          Pfam domains (12) --------------Globin-1uc3L12 L:15-124                                                                                       ------------------------- Pfam domains (12)
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: L:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uc3 L   1 PIVDSGSVAPLSAAEKTKIRSAWAPVYSNYETSGVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Globin-like (1351)

Superfamily: Globin-like (1308)

Family: Globins (1157)

Protein domain: Lamprey globin (5)

Lamprey (Lampetra fluviatilis) [TaxId: 7748] (1)

1a	d1uc3a_	A:
1b	d1uc3b_	B:
1c	d1uc3k_	K:
1d	d1uc3l_	L:
1e	d1uc3c_	C:
1f	d1uc3d_	D:
1g	d1uc3e_	E:
1h	d1uc3f_	F:
1i	d1uc3g_	G:
1j	d1uc3h_	H:
1k	d1uc3i_	I:
1l	d1uc3j_	J:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Globin-like (786)

Homologous Superfamily: Globins (743)

European river lamprey (Lampetra fluviatilis) (1)

1a	1uc3A00	A:1-149
1b	1uc3B00	B:1-149
1c	1uc3K00	K:1-149
1d	1uc3L00	L:1-149
1e	1uc3C00	C:1-149
1f	1uc3D00	D:1-149
1g	1uc3E00	E:1-149
1h	1uc3F00	F:1-149
1i	1uc3G00	G:1-149
1j	1uc3H00	H:1-149
1k	1uc3I00	I:1-149
1l	1uc3J00	J:1-149

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Globin (291)

Family: Globin (264)

Lampetra fluviatilis (European river lamprey) (Petromyzon fluviatilis) (1)

1a	Globin-1uc3L01	L:15-124
1b	Globin-1uc3L02	L:15-124
1c	Globin-1uc3L03	L:15-124
1d	Globin-1uc3L04	L:15-124
1e	Globin-1uc3L05	L:15-124
1f	Globin-1uc3L06	L:15-124
1g	Globin-1uc3L07	L:15-124
1h	Globin-1uc3L08	L:15-124
1i	Globin-1uc3L09	L:15-124
1j	Globin-1uc3L10	L:15-124
1k	Globin-1uc3L11	L:15-124
1l	Globin-1uc3L12	L:15-124

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H,I,J,K,L (GLB_LAMFL | P02207)

molecular function
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0019825	oxygen binding	Interacting selectively and non-covalently with oxygen (O2).
	GO:0005344	oxygen transporter activity	Enables the directed movement of oxygen into, out of or within a cell, or between cells.
biological process
	GO:0015671	oxygen transport	The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.

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Description

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