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(-) Description

Title :  X-RAY STRUCTURE OF NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SOR45
 
Authors :  A. P. Kuzin, S. M. Vorobiev, W. Edstrom, T. B. Acton, R. Shastry, L. -C. Ma B. Cooper, R. Xiao, G. Montelione, L. Tong, J. F. Hunt, Northeast Stru Genomics Consortium (Nesg)
Date :  09 Jul 04  (Deposition) - 27 Jul 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. P. Kuzin, S. M. Vorobiev, W. Edstrom, T. B. Acton, R. Shastry, L. -C. Ma, B. Cooper, R. Xiao, G. Montelione, L. Tong, J. F. Hunt
X-Ray Structure Of Northeast Structural Genomics Consortium Target Sor45
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - APAG PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: SHEWANELLA ONEIDENSIS
    Organism Taxid: 211586
    Strain: MR-1
    Synonym: SOR45

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1CAC1Ligand/IonCACODYLATE ION
2MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:31 , PHE B:30 , SER B:31 , SER B:85 , GLY B:86BINDING SITE FOR RESIDUE CAC B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1TZA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1TZA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1TZA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1TZA)

(-) Exons   (0, 0)

(no "Exon" information available for 1TZA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:132
 aligned with APAG_SHEON | Q8EB92 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:132
                                                                                                                                                     126        
                                    12        22        32        42        52        62        72        82        92       102       112       122   |     -  
           APAG_SHEON     3 ALDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNTAYQYTSGTVLDTPFGIMYGTYGMVSESGEHFNAIIKPFRLATPGLLH--------   -
               SCOP domains d1tzaa_ A: ApaG                                                                                                                      SCOP domains
               CATH domains 1tzaA00 A:3-134 Protein apag                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhh.eeeeeeeeeeee........eeeeeeeeeee.....eeeeeeeeeeee....eeeeeee.......ee...eeeeeeeeeee...eeeeeeeeeeee....eeeeeeeeeeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1tza A   3 ALDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNTAYQYTSGTVLDTPFGImYGTYGmVSESGEHFNAIIKPFRLATPGLLHLEHHHHHH 134
                                    12        22        32        42        52        62        72        82        92   |   102       112       122       132  
                                                                                                                        96-MSE |                                
                                                                                                                             102-MSE                            


Chain B from PDB  Type:PROTEIN  Length:129
 aligned with APAG_SHEON | Q8EB92 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:132
                                                                                                                                                     126        
                                    12        22        32        42        52        62        72        82        92       102       112       122   |     -  
           APAG_SHEON     3 ALDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNTAYQYTSGTVLDTPFGIMYGTYGMVSESGEHFNAIIKPFRLATPGLLH--------   -
               SCOP domains d1tzab_ B: ApaG                                                                                                                      SCOP domains
               CATH domains 1tzaB00 B:3-134 Prot   ein apag                                                                                                      CATH domains
           Pfam domains (1) --------------DUF525   -1tzaB01 B:17-106                                                                ---------------------------- Pfam domains (1)
           Pfam domains (2) --------------DUF525   -1tzaB02 B:17-106                                                                ---------------------------- Pfam domains (2)
         Sec.struct. author .....eeeeeeeeeeee...---..eeeeeeeeeee.....eeeeeeeeeeee....eeeeeee.......ee...eeeeeeeeeee...eeeeeeeeeeee....eeeeeeeeeeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1tza B   3 ALDNSIRVEVKTEYIEQQSS---EKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNTAYQYTSGTVLDTPFGImYGTYGmVSESGEHFNAIIKPFRLATPGLLHLEHHHHHH 134
                                    12        22   |    32        42        52        62        72        82        92   |   102       112       122       132  
                                              22  26                                                                    96-MSE |                                
                                                                                                                             102-MSE
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: DUF525] (3)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (APAG_SHEON | Q8EB92)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.

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  1tza
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 Related Entries

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