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(-) Description

Title :  1.5 A CRYSTAL STRUCTURE OF A PROTEIN OF UNKNOWN FUNCTION APE0754 FROM AEROPYRUM PERNIX
 
Authors :  R. Zhang, T. Skarina, A. Savchenko, A. Edwards, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date :  24 Jun 04  (Deposition) - 17 Aug 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Protein Structure Initiative, Mcsg, Aeropyrum Pernix, Four Layers Alpha-Beta Sandwich, Psi, Midwest Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Zhang, T. Skarina, A. Savchenko, A. Edwards, A. Joachimiak
1. 5A Crystal Structure Of A Hypothetical Protein Ape0754 From Aeropyrum Pernix
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN APE0754
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: AEROPYRUM PERNIX
    Organism Taxid: 56636

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:189
 aligned with Q9YE16_AERPE | Q9YE16 from UniProtKB/TrEMBL  Length:195

    Alignment length:189
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184         
         Q9YE16_AERPE     5 QVKPRIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFRLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEYEVAIIGDYERAMAAKQAIEMLAEGRMHSTVYRHLERIMREIKRRERLKMWARE 193
               SCOP domains -d1tuaa1 A:1-84 Hypothetical protein APE0754                                         d1tuaa2 A:85-188 Hypothetical protein APE0754                                                            SCOP domains
               CATH domains 1tuaA01 A:0-83  [code=3.30.1370.10, no name defined]                                1tuaA02 A:84-188  [code=3.30.1370.10, no name defined]                                                    CATH domains
           Pfam domains (1) --------------------------------------------------------------------------------------------------------KH_1-1tuaA01 A:104-153                            ----------------------------------- Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------------------------------------------KH_1-1tuaA02 A:104-153                            ----------------------------------- Pfam domains (2)
         Sec.struct. author .....eeee.hhhhhhhhhh..hhhhhhhhhhhheeeeee....eeeeee.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhh..eeeeeeehhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhh.eeee...eeeeeeehhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tua A   0 AMKPRIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFRLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEYEVAIIGDYERAMAAKQAIEMLAEGRMHSTVYRHLERIMREIKRRERLKMWARE 188
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179
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 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: KH (43)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9YE16_AERPE | Q9YE16)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.

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  1tua
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