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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE OXIDOREDUCTASE (VIRULENCE FACTOR MVIM HOMOLOG)
 
Authors :  K. R. Rajashankar, V. Solorzano, R. Kniewel, C. D. Lima, S. K. Burley, Ne Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  09 Jun 04  (Deposition) - 22 Jun 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Structural Genomics, Nysgxrc, T1535, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. R. Rajashankar, V. Solorzano, R. Kniewel, C. D. Lima
Crystal Structure Of A Putative Oxidoreductase (Virulence Factor Mvim Homolog)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE OXIDOREDUCTASE (VIRULENCE FACTOR MVIM HOMOLOG)
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET T7
    Expression System Strain: B834 DE3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MVIM, B1068
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1SO48Ligand/IonSULFATE ION
Biological Unit 1 (1, 16)
No.NameCountTypeFull Name
1SO416Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:150 , SER A:151 , ASN A:152 , SER A:153 , GLN A:222BINDING SITE FOR RESIDUE SO4 A 320
2AC2SOFTWAREASN A:124 , ARG A:125 , ARG A:266 , PHE A:268 , TRP B:259BINDING SITE FOR RESIDUE SO4 A 321
3AC3SOFTWAREHIS A:157 , ASP A:158 , PHE A:161 , PHE B:79BINDING SITE FOR RESIDUE SO4 A 322
4AC4SOFTWAREGLN A:260 , SER A:261 , THR A:262 , SER B:261 , THR B:262 , LEU B:263BINDING SITE FOR RESIDUE SO4 A 323
5AC5SOFTWAREARG B:150 , SER B:151 , ASN B:152 , SER B:153 , GLN B:222BINDING SITE FOR RESIDUE SO4 B 320
6AC6SOFTWAREASN B:124 , ARG B:125 , HIS B:169 , ARG B:266 , PHE B:268 , HOH B:331BINDING SITE FOR RESIDUE SO4 B 321
7AC7SOFTWAREASN B:192 , ARG B:218BINDING SITE FOR RESIDUE SO4 B 322
8AC8SOFTWAREHIS B:157 , ASP B:158BINDING SITE FOR RESIDUE SO4 B 323

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1TLT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1TLT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1TLT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1TLT)

(-) Exons   (0, 0)

(no "Exon" information available for 1TLT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:304
 aligned with YCEM_ECOLI | P75931 from UniProtKB/Swiss-Prot  Length:307

    Alignment length:304
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302    
           YCEM_ECOLI     3 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVGFNRRFAPLYGELKTQLATAASLRMDKHRSNSVGPHDLYFTLLDDYLHVVDTALWLSGGKASLDGGTLLTNDAGEMLFAEHHFSAGPLQITTCMHRRAGSQRETVQAVTDGALIDITDMREWREERGQGVVHKPIPGWQSTLEQRGFVGCARHFIECVQNQTVPQTAGEQAVLAQRIVDKIWRDAMS 306
               SCOP domains d1tlta1 A:5-127,A:268-308 Virulence factor MviM                                                                            d1tlta2 A:128-267 Virulence factor MviM                                                                                                     d1tlta1 A:5-127,A:268-308                 SCOP domains
               CATH domains 1tltA01 A:5-122 NAD(P)-binding Rossmann-like Domain                                                                   1tltA02 A:123-308 Dihydrodipicolinate Reductase; domain 2                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...hhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhh.....hhhhhhh...eeee..hhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhh.eeeeee.........hhhhhhhhhhhhhhhhhhhhh.....eeeeeeee.....eeeeeeeeee..eeeeeeee.......eeeeeee..eeeeee...eeeee....eee.......hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tlt A   5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVGFNRRFAPLYGELKTQLATAASLRMDKHRSNSVGPHDLYFTLLDDYLHVVDTALWLSGGKASLDGGTLLTNDAGEMLFAEHHFSAGPLQITTCMHRRAGSQRETVQAVTDGALIDITDMREWREERGQGVVHKPIPGWQSTLEQRGFVGCARHFIECVQNQTVPQTAGEQAVLAQRIVDKIWRDAMS 308
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304    


Chain B from PDB  Type:PROTEIN  Length:305
 aligned with YCEM_ECOLI | P75931 from UniProtKB/Swiss-Prot  Length:307

    Alignment length:305
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302     
           YCEM_ECOLI     3 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVGFNRRFAPLYGELKTQLATAASLRMDKHRSNSVGPHDLYFTLLDDYLHVVDTALWLSGGKASLDGGTLLTNDAGEMLFAEHHFSAGPLQITTCMHRRAGSQRETVQAVTDGALIDITDMREWREERGQGVVHKPIPGWQSTLEQRGFVGCARHFIECVQNQTVPQTAGEQAVLAQRIVDKIWRDAMSE 307
               SCOP domains d1tltb1 B:5-127,B:268-308 Virulence factor MviM                                                                            d1tltb2 B:128-267 Virulence factor MviM                                                                                                     d1tltb1 B:5-127,B:268-308                - SCOP domains
               CATH domains 1tltB01 B:5-122 NAD(P)-binding Rossmann-like Domain                                                                   1tltB02 B:123-309 Dihydrodipicolinate Reductase; domain 2                                                                                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..........hhhhh....eeeeeee......hhhhhhhh......hhhhhhhh..eeee..hhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhh.eeeeeeee.........hhhhhhhhhhhhhhhhhhhhhh...eeeeeeeee.....eeeeeeeeee..eeeeeeee.......eeeeeee..eeeeee...eeeee....eee.......hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tlt B   5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVGFNRRFAPLYGELKTQLATAASLRMDKHRSNSVGPHDLYFTLLDDYLHVVDTALWLSGGKASLDGGTLLTNDAGEMLFAEHHFSAGPLQITTCMHRRAGSQRETVQAVTDGALIDITDMREWREERGQGVVHKPIPGWQSTLEQRGFVGCARHFIECVQNQTVPQTAGEQAVLAQRIVDKIWRDAMSE 309
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1TLT)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (YCEM_ECOLI | P75931)
molecular function
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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