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(-) Description

Title :  VIRAL CAPSID PROTEIN SHP AT PH 5.5
 
Authors :  C. Chang, P. Forrer, D. Ott, A. Wlodawer, A. Plueckthun
Date :  21 May 04  (Deposition) - 02 Nov 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (3x)
Biol. Unit 2:  B  (3x)
Biol. Unit 3:  C  (3x)
Biol. Unit 4:  D  (3x)
Keywords :  Shp, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Forrer, C. Chang, D. Ott, A. Wlodawer, A. Plueckthun
Kinetic Stability And Crystal Structure Of The Viral Capsid Protein Shp
J. Mol. Biol. V. 344 179 2004
PubMed-ID: 15504410  |  Reference-DOI: 10.1016/J.JMB.2004.09.030
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HEAD DECORATION PROTEIN
    Chains: A, B, C, D
    Organism Scientific: ENTEROBACTERIA PHAGE P21
    Organism Taxid: 10711
    Synonym: HEAD PROTEIN GPSHP, SHP

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (3x): A   
Biological Unit 2 (3x):  B  
Biological Unit 3 (3x):   C 
Biological Unit 4 (3x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1TD0)

(-) Sites  (0, 0)

(no "Site" information available for 1TD0)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1TD0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1TD0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1TD0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1TD0)

(-) Exons   (0, 0)

(no "Exon" information available for 1TD0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:102
 aligned with DECO_BPP21 | P36275 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:102
                                    21        31        41        51        61        71        81        91       101       111  
           DECO_BPP21    12 EVRIFAGNDPAHTATGSSGISSPTPALTPLMLDEATGKLVVWDGQKAGSAVGILVLPLEGTETALTYYKSGTFATEAIHWPESVDEHKKANAFAGSALSHAA 113
               SCOP domains d1td0a_ A: Head decoration protein D (gpD, major capsid protein D)                                     SCOP domains
               CATH domains 1td0A00 A:11-112  [code=2.40.300.10, no name defined]                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........eeeeee...........eeee......eee........eeeee.........eeeeeeeeeee..........hhhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 1td0 A  11 EVRIFAGNDPAHTATGSSGISSPTPALTPLMLDEATGKLVVWDGQKAGSAVGILVLPLEGTETALTYYKSGTFATEAIHWPESVDEHKKANAFAGSALSHAA 112
                                    20        30        40        50        60        70        80        90       100       110  


Chain B from PDB  Type:PROTEIN  Length:102
 aligned with DECO_BPP21 | P36275 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:102
                                    21        31        41        51        61        71        81        91       101       111  
           DECO_BPP21    12 EVRIFAGNDPAHTATGSSGISSPTPALTPLMLDEATGKLVVWDGQKAGSAVGILVLPLEGTETALTYYKSGTFATEAIHWPESVDEHKKANAFAGSALSHAA 113
               SCOP domains d1td0b_ B: Head decoration protein D (gpD, major capsid protein D)                                     SCOP domains
               CATH domains 1td0B00 B:211-312  [code=2.40.300.10, no name defined]                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........eeeeee...........eeee......eee........eeeee.........eeeeeeeeeee..........hhhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 1td0 B 211 EVRIFAGNDPAHTATGSSGISSPTPALTPLMLDEATGKLVVWDGQKAGSAVGILVLPLEGTETALTYYKSGTFATEAIHWPESVDEHKKANAFAGSALSHAA 312
                                   220       230       240       250       260       270       280       290       300       310  


Chain C from PDB  Type:PROTEIN  Length:101
 aligned with DECO_BPP21 | P36275 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:101
                                    22        32        42        52        62        72        82        92       102       112 
           DECO_BPP21    13 VRIFAGNDPAHTATGSSGISSPTPALTPLMLDEATGKLVVWDGQKAGSAVGILVLPLEGTETALTYYKSGTFATEAIHWPESVDEHKKANAFAGSALSHAA 113
               SCOP domains d1td0c_ C: Head decoration protein D (gpD, major capsid protein D)                                    SCOP domains
               CATH domains 1td0C00 C:412-512  [code=2.40.300.10, no name defined]                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeee...........eeee......eee........eeeee.........eeeeeeeeeee..........hhhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 1td0 C 412 VRIFAGNDPAHTATGSSGISSPTPALTPLMLDEATGKLVVWDGQKAGSAVGILVLPLEGTETALTYYKSGTFATEAIHWPESVDEHKKANAFAGSALSHAA 512
                                   421       431       441       451       461       471       481       491       501       511 


Chain D from PDB  Type:PROTEIN  Length:103
 aligned with DECO_BPP21 | P36275 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:103
                                    21        31        41        51        61        71        81        91       101       111   
           DECO_BPP21    12 EVRIFAGNDPAHTATGSSGISSPTPALTPLMLDEATGKLVVWDGQKAGSAVGILVLPLEGTETALTYYKSGTFATEAIHWPESVDEHKKANAFAGSALSHAAL 114
               SCOP domains d1td0d_ D: Head decoration protein D (gpD, major capsid protein D)                                      SCOP domains
               CATH domains 1td0D00 D:611-713  [code=2.40.300.10, no name defined]                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeee...........eeee......eee........eeeee.........eeeeeeeeeee..........hhhhhhh.....eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 1td0 D 611 EVRIFAGNDPAHTATGSSGISSPTPALTPLMLDEATGKLVVWDGQKAGSAVGILVLPLEGTETALTYYKSGTFATEAIHWPESVDEHKKANAFAGSALSHAAL 713
                                   620       630       640       650       660       670       680       690       700       710
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1TD0)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (DECO_BPP21 | P36275)
cellular component
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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        DECO_BPP21 | P36275: 1td3 1td4

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