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(-) Description

Title :  1.8 A CRYSTAL STRUCTURE OF AN UNCHARACTERIZED B. STEAROTHERMOPHILUS PROTEIN
 
Authors :  G. Minasov, L. Shuvalova, A. Mondragon, B. Taneja, S. F. Moy, F. R. Collart, W. F. Anderson, Midwest Center For Structural Genomics (Mcsg)
Date :  12 May 04  (Deposition) - 18 May 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Rbstp0554, Structural Genomics, Unknown Function, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Minasov, L. Shuvalova, A. Mondragon, B. Taneja, S. F. Moy, F. R. Collart, W. F. Anderson
1. 8 A Crystal Structure Of An Uncharacterized B. Stearothermophilus Protein
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - YLMD PROTEIN SEQUENCE HOMOLOGUE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21-DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RBSTP0554
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1BME2Ligand/IonBETA-MERCAPTOETHANOL
2ZN1Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:182 , CYS A:183 , CYS A:242 , CYS A:245BINDING SITE FOR RESIDUE ZN A 275
2AC2SOFTWARELEU A:46 , HIS A:47 , ARG A:59 , GLN A:78 , CYS A:121 , HOH A:314BINDING SITE FOR RESIDUE BME A 301
3AC3SOFTWAREASP A:124 , CYS A:125 , GLY A:144 , HOH A:355 , HOH A:408 , HOH A:495 , HOH A:537BINDING SITE FOR RESIDUE BME A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1T8H)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:40 -Ser A:41

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1T8H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1T8H)

(-) Exons   (0, 0)

(no "Exon" information available for 1T8H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:272
 aligned with P84138_GEOSE | P84138 from UniProtKB/TrEMBL  Length:277

    Alignment length:272
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273  
         P84138_GEOSE     4 MPDIFQQEARGWLRCGAPPFAGAVAGLTTKHGGESKGPFASLNMGLHVGDDRTDVVNNRRRLAEWLAFPLERWVCCEQVHGADIQKVTKSDRGNGAQDFATAVPGVDGLYTDEAGVLLALCFADCVPIYFVAPSAGLVGLAHAGWRGTAGGIAGHMVWLWQTREHIAPSDIYVAIGPAIGPCCYTVDDRVVDSLRPTLPPESPLPWRETSPGQYALDLKEANRLQLLAAGVPNSHIYVSERCTSCEEALFFSHRRDRGTTGRMLAFIGRREE 275
               SCOP domains d1t8ha_ A: Hypothetical protein YlmD                                                                                                                                                                                                                                             SCOP domains
               CATH domains 1t8hA00 A:1-272 CNF1/YfiH-like putative cysteine hydrolases                                                                                                                                                                                                                      CATH domains
               Pfam domains --------------------------Cu-oxidase_4-1t8hA01 A:27-269                                                                                                                                                                                                                      --- Pfam domains
         Sec.struct. author ....eee....eeee.hhhhh..eeeee.......hhhhh..........hhhhhhhhhhhhhhhhh.hhh.ee.........eee.hhhhh.....hhhhh.....eeee.....eeeeee...eeeeeee....eeeeeeehhhhhhhhhhhhhhhhhhhh...hhhhheeee.........eehhhhhhhhhhhh.......eeeee..eeeehhhhhhhhhhhhh..hhh.eee........................eeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t8h A   1 MPDIFQQEARGWLRCGAPPFAGAVAGLTTKHGGESKGPFASLNMGLHVGDDRTDVVNNRRRLAEWLAFPLERWVCCEQVHGADIQKVTKSDRGNGAQDFATAVPGVDGLYTDEAGVLLALCFADCVPIYFVAPSAGLVGLAHAGWRGTAGGIAGHMVWLWQTREHIAPSDIYVAIGPAIGPCCYTVDDRVVDSLRPTLPPESPLPWRETSPGQYALDLKEANRLQLLAAGVPNSHIYVSERCTSCEEALFFSHRRDRGTTGRMLAFIGRREE 272
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Cu-oxidase_4] (6)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (P84138_GEOSE | P84138)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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  1t8h
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 Related Entries

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