1T82 - JenaLib

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Title :   CRYSTAL STRUCTURE OF THE PUTATIVE THIOESTERASE FROM SHEWANELLA ONEIDENSIS, NORTHEAST STRUCTURAL GENOMICS TARGET SOR51

Authors :   F. Forouhar, I. Lee, S. M. Vorobiev, R. Xiao, T. B. Acton, G. T. Montelion J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (N

Date :   11 May 04 (Deposition) - 18 May 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Structural Genomics, Alpha-Beta Dimeric Protein With A Fold Resembling A Hotdog, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Forouhar, I. Lee, S. M. Vorobiev, R. Xiao, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of The Putative Thioesterase From Shewanella Oneidensis, Northeast Structural Genomics Target Sor51
To Be Published
PubMed: search

Molecule 1 - HYPOTHETICAL ACETYLTRANSFERASE
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Plasmid	:	BL21(DE3)+MAGIC
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector	:	PET21
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	SHEWANELLA ONEIDENSIS
	Organism Taxid	:	211586
	Strain	:	MR-1

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 20)

No.	Name	Count	Type	Full Name
1	MSE	20	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 10)

No.	Name	Count	Type	Full Name
1	MSE	10	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 10)

No.	Name	Count	Type	Full Name
1	MSE	10	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 1T82)

(no "SS Bond" information available for 1T82)

(no "Cis Peptide Bond" information available for 1T82)

(no "SAP(SNP)/Variant" information available for 1T82)

(no "PROSITE Motif" information available for 1T82)

(no "Exon" information available for 1T82)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:143
 aligned with Q8E989_SHEON | Q8E989 from UniProtKB/TrEMBL  Length:145

    Alignment length:143
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140   
         Q8E989_SHEON     1 MDELLNRLRQTWHSTIPVSEFMQIAPLSFTDGELSVSAPLAPNINLHHTMFAGSIYTIMTLTGWGMVWLQQQLLNVDGDIVLADAHIRYLAPVTSAPEVKVRWPDTNLSPLQRGRKAKVKLEVQLFCDGKLCAQFDGLYVSVP 143
               SCOP domains d1t82a_ A: Putative thioesterase SO4397                                                                                                         SCOP domains
               CATH domains -1t82A00 A:2-143  [code=3.10.129.10, no name defined]                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh..eeeeee..eeeee..hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee........eeeee.....hhhhhhh..eeeeeeeeeee..eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t82 A   1 mDELLNRLRQTWHSTIPVSEFmQIAPLSFTDGELSVSAPLAPNINLHHTmFAGSIYTImTLTGWGmVWLQQQLLNVDGDIVLADAHIRYLAPVTSAPEVKVRWPDTNLSPLQRGRKAKVKLEVQLFCDGKLCAQFDGLYVSVP 143
                            |       10        20 |      30        40        50        60     |  70        80        90       100       110       120       130       140   
                            |                   22-MSE                      50-MSE   59-MSE 66-MSE                                                                         
                            1-MSE

Chain B from PDB  Type:PROTEIN  Length:147
 aligned with Q8E989_SHEON | Q8E989 from UniProtKB/TrEMBL  Length:145

    Alignment length:147
                                1                                                                                                                                              
                                |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       
         Q8E989_SHEON     - ----MDELLNRLRQTWHSTIPVSEFMQIAPLSFTDGELSVSAPLAPNINLHHTMFAGSIYTIMTLTGWGMVWLQQQLLNVDGDIVLADAHIRYLAPVTSAPEVKVRWPDTNLSPLQRGRKAKVKLEVQLFCDGKLCAQFDGLYVSVP 143
               SCOP domains d1t82b_ B: Putative thioesterase SO4397                                                                                                             SCOP domains
               CATH domains 1t82B00 B:-5-143  [code=3.10.129.10, no name defined]                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhh..eeeeee..eeeee..hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee........eeeee.....hhhhhhh..eeeeeeeeeee..eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t82 B  -5 HHHHmDELLNRLRQTWHSTIPVSEFmQIAPLSFTDGELSVSAPLAPNINLHHTmFAGSIYTImTLTGWGmVWLQQQLLNVDGDIVLADAHIRYLAPVTSAPEVKVRWPDTNLSPLQRGRKAKVKLEVQLFCDGKLCAQFDGLYVSVP 143
                               ||    6        16     |  26        36        46   |    56  |     66        76        86        96       106       116       126       136       
                              -2|                   22-MSE                      50-MSE   59-MSE 66-MSE                                                                         
                                1-MSE

Chain C from PDB  Type:PROTEIN  Length:144
 aligned with Q8E989_SHEON | Q8E989 from UniProtKB/TrEMBL  Length:145

    Alignment length:144
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141    
         Q8E989_SHEON     2 DELLNRLRQTWHSTIPVSEFMQIAPLSFTDGELSVSAPLAPNINLHHTMFAGSIYTIMTLTGWGMVWLQQQLLNVDGDIVLADAHIRYLAPVTSAPEVKVRWPDTNLSPLQRGRKAKVKLEVQLFCDGKLCAQFDGLYVSVPKM 145
               SCOP domains d1t82c_ C: Putative thioesterase SO4397                                                                                                          SCOP domains
               CATH domains 1t82C00 C:2-144  [code=3.10.129.10, no name defined]                                                                                           - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh..eeeeee..eeeee..hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee........eeeee.....hhhhhh...eeeeeeeeeee..eeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t82 C   2 DELLNRLRQTWHSTIPVSEFmQIAPLSFTDGELSVSAPLAPNINLHHTmFAGSIYTImTLTGWGmVWLQQQLLNVDGDIVLADAHIRYLAPVTSAPEVKVRWPDTNLSPLQRGRKAKVKLEVQLFCDGKLCAQFDGLYVSVPKm 145
                                    11        21|       31        41        51       |61    |   71        81        91       101       111       121       131       141   |
                                               22-MSE                      50-MSE   59-MSE 66-MSE                                                                        145-MSE

Chain D from PDB  Type:PROTEIN  Length:136
 aligned with Q8E989_SHEON | Q8E989 from UniProtKB/TrEMBL  Length:145

    Alignment length:143
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140   
         Q8E989_SHEON     1 MDELLNRLRQTWHSTIPVSEFMQIAPLSFTDGELSVSAPLAPNINLHHTMFAGSIYTIMTLTGWGMVWLQQQLLNVDGDIVLADAHIRYLAPVTSAPEVKVRWPDTNLSPLQRGRKAKVKLEVQLFCDGKLCAQFDGLYVSVP 143
               SCOP domains d1t82d_ D: Putative thioesterase SO4397                                                                                                         SCOP domains
               CATH domains -1t82D00 D:2-143  [code=3.10.129.10, no name defined]                                                                                           CATH domains
           Pfam domains (1) ----YiiD_Cterm-1t82D01 D:5-143                                                                                                                  Pfam domains (1)
           Pfam domains (2) ----YiiD_Cterm-1t82D02 D:5-143                                                                                                                  Pfam domains (2)
           Pfam domains (3) ----YiiD_Cterm-1t82D03 D:5-143                                                                                                                  Pfam domains (3)
           Pfam domains (4) ----YiiD_Cterm-1t82D04 D:5-143                                                                                                                  Pfam domains (4)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh..eeeeee..eeeee..hhhhh......hhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeeee........eeeee..-------.....eeeeeeeeeee..eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t82 D   1 mDELLNRLRQTWHSTIPVSEFmQIAPLSFTDGELSVSAPLAPNINLHHTmFAGSIYTImTLTGWGmVWLQQQLLNVDGDIVLADAHIRYLAPVTSAPEVKVRWP-------QRGRKAKVKLEVQLFCDGKLCAQFDGLYVSVP 143
                            |       10        20 |      30        40        50        60     |  70        80        90       100   |     - |     120       130       140   
                            |                   22-MSE                      50-MSE   59-MSE 66-MSE                               104     112                               
                            1-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Thioesterase/thiol ester dehydrase-isomerase (151)

Superfamily: Thioesterase/thiol ester dehydrase-isomerase (151)

Family: PaaI/YdiI-like (44)

Protein domain: Putative thioesterase SO4397 (1)

Shewanella oneidensis [TaxId: 70863] (1)

1a	d1t82a_	A:
1b	d1t82b_	B:
1c	d1t82c_	C:
1d	d1t82d_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Roll (3276)

Topology: Thiol Ester Dehydrase; Chain A (90)

Homologous Superfamily: [code=3.10.129.10, no name defined] (90)

Shewanella oneidensis mr-1. Organism_taxid: 211586. Strain: mr-1. (1)

1a	1t82A00	A:2-143
1b	1t82C00	C:2-144
1c	1t82B00	B:-5-143
1d	1t82D00	D:2-143

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: HotDog (52)

Family: YiiD_Cterm (1)

Shewanella oneidensis (1)

1a	YiiD_Cterm-1t82D01	D:5-143
1b	YiiD_Cterm-1t82D02	D:5-143
1c	YiiD_Cterm-1t82D03	D:5-143
1d	YiiD_Cterm-1t82D04	D:5-143

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (Q8E989_SHEON | Q8E989)

molecular function
	GO:0003674	molecular_function	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
	GO:0008150	biological_process	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
	GO:0005575	cellular_component	The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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