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Title :   CRYSTAL STRUCTURE OF RIBOSYLGLYCOHYDROLASE MJ1187 FROM METHANOCOCCUS JANNASCHII

Authors :   A. Gogos, J. Gorman, L. Shapiro, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)

Date :   04 May 04 (Deposition) - 11 May 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym./Biol. Unit : A

Keywords :   Putative Hydrolase, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Gogos, J. Gorman, L. Shapiro
Crystal Structure Of Hypothetical Protein Mj1187 From Methanococcus Jannaschii
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - HYPOTHETICAL PROTEIN MJ1187
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	MODIFIED PET26B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	MJ1187
	Organism Scientific	:	METHANOCALDOCOCCUS JANNASCHII
	Organism Taxid	:	2190

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 1)

No.	Name	Count	Type	Full Name
1	MG	1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:26 , THR A:60 , ASP A:61 , ASP A:62 , ASP A:253 , ASP A:255 , SER A:256 , HOH A:513	BINDING SITE FOR RESIDUE MG A 500

(no "SS Bond" information available for 1T5J)

(no "Cis Peptide Bond" information available for 1T5J)

(no "SAP(SNP)/Variant" information available for 1T5J)

(no "PROSITE Motif" information available for 1T5J)

(no "Exon" information available for 1T5J)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:301
 aligned with Y1187_METJA | Q58588 from UniProtKB/Swiss-Prot  Length:301

    Alignment length:301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 
          Y1187_METJA     1 MVKMRDKILGSVFGAVIGDALGMPTENLTKEEIKKLYGFVDSYVEPKNYLAGKLNKGEWTDDTEQAICLIKSLTKEGIDIKKFANCLIAWKNKNPPDIGLTSLMAIDKLENNDYSGVDSSSCGAAMRIYPLGIVFHNNLKKLKEEVIKASKITHNNKTAIAGALAIAFFVSSALKDRKDFSLLDECYNYIKDIDEEFAKKLLEIKNFNNLDYIYDYFGTGVKTDEVVPSAIATYLLTDNFKEGMLKCINAGGDTDSLASMYGAMAGAYYGFKNIPKEWIDGLKNKEVIFELAERLYHLATE 301
               SCOP domains d1t5ja_ A: Hypothetical protein MJ1187                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------ADP_ribosyl_GH-1t5jA01 A:10-278                                                                                                                                                                                                                                              ----------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh......................hhhhhhhhhhhhhee..eehhhhhhhhhhhhhh......hhhhhhhhhhh..............hhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t5j A   1 LVKMRDKILGSVFGAVIGDALGMPTENLTKEEIKKLYGFVDSYVEPKNYLAGKLNKGEWTDDTEQAICLIKSLTKEGIDIKKFANCLIAWKNKNPPDIGLTSLMAIDKLENNDYSGVDSSSCGAAMRIYPLGIVFHNNLKKLKEEVIKASKITHNNKTAIAGALAIAFFVSSALKDRKDFSLLDECYNYIKDIDEEFAKKLLEIKNFNNLDYIYDYFGTGVKTDEVVPSAIATYLLTDNFKEGMLKCINAGGDTDSLASMYGAMAGAYYGFKNIPKEWIDGLKNKEVIFELAERLYHLATE 301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

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Families(

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Protein Domains( (-)

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Class: All alpha proteins (14657)

Fold: ADP-ribosylglycohydrolase (6)

Superfamily: ADP-ribosylglycohydrolase (6)

Family: ADP-ribosylglycohydrolase (1)

Protein domain: Hypothetical protein MJ1187 (1)

Methanococcus jannaschii [TaxId: 2190] (1)

d1t5ja_

(no "CATH Domain" information available for 1T5J)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (Y1187_METJA | Q58588)

molecular function
	GO:0016787		hydrolase activity		Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

Asymmetric/Biological Unit
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Ligands, Modified Residues, Ions (1, 1)

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