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(-) Description

Title :  CRYSTAL STRUCTURE OF A HUMAN VH DOMAIN
 
Authors :  R. K. Gaur, R. Fischer, K. M. V. Hoffmann
Date :  21 Apr 04  (Deposition) - 03 May 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta-Sandwich, Immunoglobulin Fold, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. K. Gaur, R. Fischer, K. M. V. Hoffmann
Crystal Structure Of A Human Vh Domain At 1. 5 Angstrom
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - M12-VARIABLE HEAVY DOMAIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSYN
    Expression System Strain: TG1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1PEG1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:47 , HOH A:340BINDING SITE FOR RESIDUE PEG A 214

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:22 -A:92

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1T2J)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1T2J)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:116
 aligned with Q9HCC1_HUMAN | Q9HCC1 from UniProtKB/TrEMBL  Length:112

    Alignment length:116
                                                                                                                                         112    
                                    10        20        30        40        50        60        70        80        90       100       110 |    
         Q9HCC1_HUMAN     1 EVQLVESGGGVVRPGGSLRISCAASGFTFDDYGMSWVRQAPGKGLEWVSGINWNGGSTGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARRRYALDYWGQGTLV----   -
               SCOP domains d1t2ja_ A: automated matches                                                                                         SCOP domains
               CATH domains 1t2jA00 A:1-113 Immunoglobulins                                                                                      CATH domains
               Pfam domains -V-set-1t2jA01 A:2-107                                                                                        ------ Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee......eee.......eeeeeehhh.eeeeee...hhhhheeeeee............eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 1t2j A   1 QVQLQESGGGLVQPGGSLRLSCAASGFTFSNSAMSWVRQAPGKGLEWVSSISGSGGNTYSADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARDWYGMDVWGQGTTVTVSS 113
                                    10        20        30        40        50  |     59        69        79   |||  86        96  ||   107      
                                                                              52A                            82A||               99|            
                                                                                                              82B|               101            
                                                                                                               82C
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Ig (577)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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(-) Related Entries Specified in the PDB File

1hou THEORETICAL MODEL OF THE UNMUTATED, MAJOR CANONICAL ANTIBODY SPECIFIC FOR HAEMOPHILUS INFLUENZAE TYPE B CAPSULAR POLYSACCHARIDE
1ol0 CRYSTAL STRUCTURE OF A CAMELISED HUMAN VH
1vhp VH-P8, NMR