1T02 - JenaLib

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Title :   CRYSTAL STRUCTURE OF A STATIN BOUND TO CLASS II HMG-COA REDUCTASE

Authors :   L. Tabernero, V. W. Rodwell, C. Stauffacher

Date :   07 Apr 04 (Deposition) - 03 Aug 04 (Release) - 21 Jan 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A,B  (3x)

Keywords :   Statin, Hmg-Coa Reductase, Complex, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Tabernero, V. W. Rodwell, C. V. Stauffacher
Crystal Structure Of A Statin Bound To A Class Ii Hydroxymethylglutaryl-Coa Reductase.
J. Biol. Chem. V. 278 19933 2003
PubMed-ID: 12621048 | Reference-DOI: 10.1074/JBC.M213006200

Molecule 1 - 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE
	Chains	:	A, B
	EC Number	:	1.1.1.88
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PKK177-3
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	MVAA
	Organism Scientific	:	PSEUDOMONAS MEVALONII
	Organism Taxid	:	32044
	Synonym	:	HMG-COA REDUCTASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (3x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 2)

No.	Name	Count	Type	Full Name
1	LVA	1	Ligand/Ion	(3R,5R)-7-((1R,2R,6S,8R,8AS)-2,6-DIMETHYL-8-{[(2R)-2-METHYLBUTANOYL]OXY}-1,2,6,7,8,8A-HEXAHYDRONAPHTHALEN-1-YL)-3,5-DIHYDROXYHEPTANOIC ACID
2	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	LVA	1	Ligand/Ion	(3R,5R)-7-((1R,2R,6S,8R,8AS)-2,6-DIMETHYL-8-{[(2R)-2-METHYLBUTANOYL]OXY}-1,2,6,7,8,8A-HEXAHYDRONAPHTHALEN-1-YL)-3,5-DIHYDROXYHEPTANOIC ACID
2	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 6)

No.	Name	Count	Type	Full Name
1	LVA	3	Ligand/Ion	(3R,5R)-7-((1R,2R,6S,8R,8AS)-2,6-DIMETHYL-8-{[(2R)-2-METHYLBUTANOYL]OXY}-1,2,6,7,8,8A-HEXAHYDRONAPHTHALEN-1-YL)-3,5-DIHYDROXYHEPTANOIC ACID
2	SO4	3	Ligand/Ion	SULFATE ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	MET B:185 , GLY B:186 , ALA B:187 , ASN B:188 , THR B:189	BINDING SITE FOR RESIDUE SO4 B 429
2	AC2	SOFTWARE	GLU A:83 , SER A:85 , ARG A:261 , THR A:264 , LYS A:267 , GLY A:268 , ASN A:271 , GLN A:364 , ALA A:368 , HOH A:1001 , HOH A:1002	BINDING SITE FOR RESIDUE LVA A 429

(no "SS Bond" information available for 1T02)

(no "Cis Peptide Bond" information available for 1T02)

(no "SAP(SNP)/Variant" information available for 1T02)

Asymmetric Unit (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HMG_COA_REDUCTASE_1	PS00066	Hydroxymethylglutaryl-coenzyme A reductases signature 1.	MVAA_PSEMV	176-190	2	A:176-190 B:176-190
2	HMG_COA_REDUCTASE_2	PS00318	Hydroxymethylglutaryl-coenzyme A reductases signature 2.	MVAA_PSEMV	325-332	2	A:325-332 B:325-332
3	HMG_COA_REDUCTASE_3	PS01192	Hydroxymethylglutaryl-coenzyme A reductases signature 3.	MVAA_PSEMV	371-384	2	A:371-374 B:371-377

Biological Unit 1 (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HMG_COA_REDUCTASE_1	PS00066	Hydroxymethylglutaryl-coenzyme A reductases signature 1.	MVAA_PSEMV	176-190	2	A:176-190 B:176-190
2	HMG_COA_REDUCTASE_2	PS00318	Hydroxymethylglutaryl-coenzyme A reductases signature 2.	MVAA_PSEMV	325-332	2	A:325-332 B:325-332
3	HMG_COA_REDUCTASE_3	PS01192	Hydroxymethylglutaryl-coenzyme A reductases signature 3.	MVAA_PSEMV	371-384	2	A:371-374 B:371-377

Biological Unit 2 (3, 18)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HMG_COA_REDUCTASE_1	PS00066	Hydroxymethylglutaryl-coenzyme A reductases signature 1.	MVAA_PSEMV	176-190	6	A:176-190 B:176-190
2	HMG_COA_REDUCTASE_2	PS00318	Hydroxymethylglutaryl-coenzyme A reductases signature 2.	MVAA_PSEMV	325-332	6	A:325-332 B:325-332
3	HMG_COA_REDUCTASE_3	PS01192	Hydroxymethylglutaryl-coenzyme A reductases signature 3.	MVAA_PSEMV	371-384	6	A:371-374 B:371-377

(no "Exon" information available for 1T02)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:371
 aligned with MVAA_PSEMV | P13702 from UniProtKB/Swiss-Prot  Length:428

    Alignment length:371
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373 
           MVAA_PSEMV     4 DSRLPAFRNLSPAARLDHIGQLLGLSHDDVSLLANAGALPMDIANGMIENVIGTFELPYAVASNFQINGRDVLVPLVVEEPSIVAAASYMAKLARANGGFTTSSSAPLMHAQVQIVGIQDPLNARLSLLRRKDEIIELANRKDQLLNSLGGGCRDIEVHTFADTPRGPMLVAHLIVDVRDAMGANTVNTMAEAVAPLMEAITGGQVRLRILSNLADLRLARAQVRITPQQLETAEFSGEAVIEGILDAYAFAAVDPYRAATHNKGIMNGIDPLIVATGNDWRAVEAGAHAYACRSGHYGSLTTWEKDNNGHLVGTLEMPMPVGLVGGATKTHPLAQLSLRILGVKTAQALAEIAVAVGLAQNLGAMRALAT 374
               SCOP domains d1t02a2 A:4-110,A:221-374 Substrate-binding domain of HMG-CoA reductase                                    d1t02a1 A:111-220 NAD-binding domain of HMG-CoA reductase                                                     d1t02a2 A:4-110,A:221-374 Substrate-binding domain of HMG-CoA reductase                                                                                    SCOP domains
               CATH domains 1t02A02 A:4-108,A:221-374 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2             --1t02A01 A:111-220  [code=3.30.70.420, no name defined]                                                        1t02A02 A:4-108,A:221-374 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhh....hhhhhhhhh..eeeeeeeeeeee...ee..ee..eeee....hhhhhhhhhhhhhhhh...eeee...eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeee.......eeeeeeeee.....hhhhhhhhhhhhhhhhhhhhh.eeeeeee.......eeeeeeeehhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh........eeeee.....eeeeeeee.......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_REDUCTA--------------------------------------------------------------------------------------------------------------------------------------HMG_COA_--------------------------------------HMG_ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t02 A   4 DSRLPAFRNLSPAARLDHIGQLLGLSHDDVSLLANAGALPMDIANGMIENVIGTFELPYAVASNFQINGRDVLVPLVVEEPSIVAAASYMAKLARANGGFTTSSSAPLMHAQVQIVGIQDPLNARLSLLRRKDEIIELANRKDQLLNSLGGGCRDIEVHTFADTPRGPMLVAHLIVDVRDAMGANTVNTMAEAVAPLMEAITGGQVRLRILSNLADLRLARAQVRITPQQLETAEFSGEAVIEGILDAYAFAAVDPYRAATHNKGIMNGIDPLIVATGNDWRAVEAGAHAYACRSGHYGSLTTWEKDNNGHLVGTLEMPMPVGLVGGATKTHPLAQLSLRILGVKTAQALAEIAVAVGLAQNLGAMRALAT 374
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373

Chain B from PDB  Type:PROTEIN  Length:374
 aligned with MVAA_PSEMV | P13702 from UniProtKB/Swiss-Prot  Length:428

    Alignment length:374
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373    
           MVAA_PSEMV     4 DSRLPAFRNLSPAARLDHIGQLLGLSHDDVSLLANAGALPMDIANGMIENVIGTFELPYAVASNFQINGRDVLVPLVVEEPSIVAAASYMAKLARANGGFTTSSSAPLMHAQVQIVGIQDPLNARLSLLRRKDEIIELANRKDQLLNSLGGGCRDIEVHTFADTPRGPMLVAHLIVDVRDAMGANTVNTMAEAVAPLMEAITGGQVRLRILSNLADLRLARAQVRITPQQLETAEFSGEAVIEGILDAYAFAAVDPYRAATHNKGIMNGIDPLIVATGNDWRAVEAGAHAYACRSGHYGSLTTWEKDNNGHLVGTLEMPMPVGLVGGATKTHPLAQLSLRILGVKTAQALAEIAVAVGLAQNLGAMRALATEGI 377
               SCOP domains d1t02b2 B:4-110,B:221-374 Substrate-binding domain of HMG-CoA reductase                                    d1t02b1 B:111-220 NAD-binding domain of HMG-CoA reductase                                                     d1t02b2 B:4-110,B:221-374 Substrate-binding domain of HMG-CoA reductase                                                                                   --- SCOP domains
               CATH domains 1t02B02 B:4-108,B:221-375 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2             --1t02B01 B:111-220  [code=3.30.70.420, no name defined]                                                        1t02B02 B:4-108,B:221-375 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2                                                               -- CATH domains
           Pfam domains (1) --------HMG-CoA_red-1t02B01 B:12-377                                                                                                                                                                                                                                                                                                                                                   Pfam domains (1)
           Pfam domains (2) --------HMG-CoA_red-1t02B02 B:12-377                                                                                                                                                                                                                                                                                                                                                   Pfam domains (2)
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhh....hhhhhhhhh..eeeeeeeeeeee...ee..ee..eeee....hhhhhhhhhhhhhhhh...eeee...eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeee.......eeeeeeeee.....hhhhhhhhhhhhhhhhhhhhh.eeeeeee.......eeeeeeeehhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh........eeeee.....eeeeeeee.......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_REDUCTA--------------------------------------------------------------------------------------------------------------------------------------HMG_COA_--------------------------------------HMG_COA PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t02 B   4 DSRLPAFRNLSPAARLDHIGQLLGLSHDDVSLLANAGALPMDIANGMIENVIGTFELPYAVASNFQINGRDVLVPLVVEEPSIVAAASYMAKLARANGGFTTSSSAPLMHAQVQIVGIQDPLNARLSLLRRKDEIIELANRKDQLLNSLGGGCRDIEVHTFADTPRGPMLVAHLIVDVRDAMGANTVNTMAEAVAPLMEAITGGQVRLRILSNLADLRLARAQVRITPQQLETAEFSGEAVIEGILDAYAFAAVDPYRAATHNKGIMNGIDPLIVATGNDWRAVEAGAHAYACRSGHYGSLTTWEKDNNGHLVGTLEMPMPVGLVGGATKTHPLAQLSLRILGVKTAQALAEIAVAVGLAQNLGAMRALATEGI 377
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: HMG-CoA_red] (11)

Family: HMG-CoA_red (11)

Pseudomonas mevalonii (5)

1a	HMG-CoA_red-1t02B01	B:12-377
1b	HMG-CoA_red-1t02B02	B:12-377

Asymmetric Unit(hide GO term definitions)

Chain A,B (MVAA_PSEMV | P13702)

molecular function
	GO:0050662	coenzyme binding	Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed.
	GO:0004420	hydroxymethylglutaryl-CoA reductase (NADPH) activity	Catalysis of the reaction: (R)-mevalonate + CoA + 2 NADP(+) = (S)-3-hydroxy-3-methylglutaryl-CoA + 2 H(+) + 2 NADPH.
	GO:0042282	hydroxymethylglutaryl-CoA reductase activity	Catalysis of the reaction: (R)-mevalonate + CoA + 2 NAD(+) = (S)-3-hydroxy-3-methylglutaryl-CoA + 2 H(+) + 2 NADH.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
biological process
	GO:0015936	coenzyme A metabolic process	The chemical reactions and pathways involving coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric Unit
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	1t02
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	1.1.1.88
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	MVAA_PSEMV \| P13702	:	1qax 1qay 1r31 1r7i 4i4b 4i56 4i64 4i6a 4i6w 4i6y

1qax	TERNARY COMPLEX OF PSEUDOMONAS MEVALONII HMG-COA REDUCTASE WITH HMG-COA AND NAD+
1qay	TERNARY COMPLEX OF PSEUDOMONAS MEVALONII HMG-COA REDUCTASE WITH MEVALONATE AND NAD+
1r31	HMG-COA REDUCTASE FROM PSEUDOMONAS MEVALONII COMPLEXED WITH HMG-COA
1r7i	HMG-COA REDUCTASE FROM P. MEVALONII, NATIVE STRUCTURE AT 2.2 ANGSTROMS RESOLUTION

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