Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Theor.Model - manually
(-)Theoretical Model
collapse expand < >
Image Theor.Model - manually
Theor.Model - manually  (Jmol Viewer)
Image Theoretical Model
Theoretical Model  (Jmol Viewer)

(-) Description

Title :  MONITORING OF THE COOPERATIVE UNFOLDING OF THE SUNY GROUP I INTRON OF BACTERIOPHAGE T4: THE ACTIVE FORM OF THE SUNY RIBOZYME IS STABILIZED BY MULTIPLE INTERACTIONS WITH 3' TERMINAL INTRON COMPONENTS
 
Authors :  L. Jaeger, E. Westhof, F. Michel
Date :  21 Jun 94  (Deposition) - 31 Aug 94  (Release) - 01 Apr 03  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. Jaeger, E. Westhof, F. Michel
Monitoring Of The Cooperative Unfolding Of The Suny Group I Intron Of Bacteriophage T4. The Active Form Of The Suny Ribozyme Is Stabilized By Multiple Interactions With 3' Terminal Intron Components.
J. Mol. Biol. V. 234 331 1993
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RNA (255-MER)
    ChainsA
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  
Theoretical Model 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1SUN)

(-) Sites  (0, 0)

(no "Site" information available for 1SUN)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1SUN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1SUN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1SUN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1SUN)

(-) Exons   (0, 0)

(no "Exon" information available for 1SUN)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:RNA  Length:255
                                                                                                                                                                                                                                                                                               
                 1sun A   1 AUGAGUUCAAGCUCAUGUAAAAUCUGCCUAAAACGGGAAACUCUCACUGAGACAAUCCGUUGCUAAAUCAGCAGUAGCUGUAAAUGCCCAACGACUAUCCCUGAUGAAUGUAAGGGAGUAGGGUCAAGCGACCCGAAACGGCAGACAACUCUAAGAGUUGAAGAUAUAGUCUGAACUGCAUGGUGACAUGCAGCUGUUUAUCCUCGCGAUAUAAACGGGUAGAGAAGUAGCGAACUCUACUGAACACAUUGAUGA 937
                                 || 13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193     ||882       892       902       912       922       932     
                                 6|                                                                                                                                                                                          199|                                                          
                                 10                                                                                                                                                                                           879                                                          

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1SUN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1SUN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1SUN)

(-) Gene Ontology  (0, 0)

Theoretical Model(hide GO term definitions)
    (no "Gene Ontology" information available for 1SUN)

 Visualization

(-) Interactive Views

Theoretical Model
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 1sun)
 
  Sites
(no "Sites" information available for 1sun)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1sun)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
Insightii
  ribbon
  ribbon, sticks
  spacefill
Midas
  ribbon, plates
  spacefill
Setor
  ribbon, labeling
  ribbon, sticks
Distance Plot
  representative atom O3*

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1sun
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP | HSSP
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  (no 'UniProt ID/Accession number' available) |
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  (no 'UniProt ID/Accession number' available) |
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 1SUN)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1SUN)