1SS4 - JenaLib

Asymmetric Unit (7, 20)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	CIT	1	Ligand/Ion	CITRIC ACID
3	FMT	4	Ligand/Ion	FORMIC ACID
4	GSH	1	Ligand/Ion	GLUTATHIONE
5	MG	1	Ligand/Ion	MAGNESIUM ION
6	MSE	11	Mod. Amino Acid	SELENOMETHIONINE
7	NA	1	Ligand/Ion	SODIUM ION

Biological Unit 1 (5, 18)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	CIT	1	Ligand/Ion	CITRIC ACID
3	FMT	4	Ligand/Ion	FORMIC ACID
4	GSH	1	Ligand/Ion	GLUTATHIONE
5	MG	-1	Ligand/Ion	MAGNESIUM ION
6	MSE	11	Mod. Amino Acid	SELENOMETHIONINE
7	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 2 (5, 36)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	CIT	2	Ligand/Ion	CITRIC ACID
3	FMT	8	Ligand/Ion	FORMIC ACID
4	GSH	2	Ligand/Ion	GLUTATHIONE
5	MG	-1	Ligand/Ion	MAGNESIUM ION
6	MSE	22	Mod. Amino Acid	SELENOMETHIONINE
7	NA	-1	Ligand/Ion	SODIUM ION

Sites (9, 9)

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	VAL A:47 , THR A:48 , HOH A:543	BINDING SITE FOR RESIDUE ACT A 411
2	AC2	SOFTWARE	ASP A:82 , HOH A:458 , HOH A:467 , HOH B:569	BINDING SITE FOR RESIDUE NA A 301
3	AC3	SOFTWARE	HOH B:442 , HOH B:449 , HOH B:496	BINDING SITE FOR RESIDUE MG B 302
4	AC4	SOFTWARE	TYR A:128 , HOH A:545 , HOH A:554 , ASN B:11 , FMT B:404 , HOH B:479	BINDING SITE FOR RESIDUE CIT A 431
5	AC5	SOFTWARE	TYR A:124 , GLU B:34 , ARG B:36 , ALA B:37 , ASN B:38 , VAL B:61 , HOH B:485 , HOH B:489 , HOH B:562 , HOH B:563	BINDING SITE FOR RESIDUE GSH B 432
6	AC6	SOFTWARE	HIS A:83 , ALA A:86 , ALA A:90 , HOH A:458 , ALA B:81 , ASP B:82 , HIS B:83 , HOH B:569	BINDING SITE FOR RESIDUE FMT B 401
7	AC7	SOFTWARE	VAL B:118 , ARG B:134 , HOH B:456	BINDING SITE FOR RESIDUE FMT B 402
8	AC8	SOFTWARE	VAL A:118 , ARG A:134 , HOH A:457 , HOH A:507 , HOH B:491	BINDING SITE FOR RESIDUE FMT A 403
9	AC9	SOFTWARE	CIT A:431	BINDING SITE FOR RESIDUE FMT B 404

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:149
 aligned with Q81F54_BACCR | Q81F54 from UniProtKB/TrEMBL  Length:150

    Alignment length:149
                             1                                                                                                                                                   
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139         
         Q81F54_BACCR     - -MAKNKLLRMDNVSIVVESLDNAISFFEEIGLNLEGRANVEGEWAGRVTGLGSQCVEIAMMVTPDGHSRIELSRFLTPPTIADHRTAPVNALGYLRVMFTVEDIDEMVSRLTKHGAELVGEVVQYENSYRLCYIRGVEGILIGLAEELG 148
               SCOP domains d1ss4a_ A: Hypothetical protein BC1747                                                                                                                SCOP domains
               CATH domains 1ss4A00 A:0-148 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeee..hhhhhhhhhhhhh.eeeeeeee.hhhhhhhhh....eeeeeeee......eeeeeeeee...............eeeeeeeee.hhhhhhhhhhhh..ee....eee...eeeeeee.hhh.eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ss4 A   0 AmAKNKLLRmDNVSIVVESLDNAISFFEEIGLNLEGRANVEGEWAGRVTGLGSQCVEIAmmVTPDGHSRIELSRFLTPPTIADHRTAPVNALGYLRVmFTVEDIDEmVSRLTKHGAELVGEVVQYENSYRLCYIRGVEGILIGLAEELG 148
                             |       9        19        29        39        49        59|       69        79        89       |99      |109       119       129       139         
                             |       9-MSE                                            59-MSE                                97-MSE  106-MSE                                      
                             1-MSE                                                     60-MSE

Chain B from PDB  Type:PROTEIN  Length:145
 aligned with Q81F54_BACCR | Q81F54 from UniProtKB/TrEMBL  Length:150

    Alignment length:145
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143     
         Q81F54_BACCR     4 NKLLRMDNVSIVVESLDNAISFFEEIGLNLEGRANVEGEWAGRVTGLGSQCVEIAMMVTPDGHSRIELSRFLTPPTIADHRTAPVNALGYLRVMFTVEDIDEMVSRLTKHGAELVGEVVQYENSYRLCYIRGVEGILIGLAEELG 148
               SCOP domains d1ss4b_ B: Hypothetical protein BC1747                                                                                                            SCOP domains
               CATH domains 1ss4B00 B:4-148 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1                                                                                   CATH domains
           Pfam domains (1) ----------Glyoxalase_2-1ss4B01 B:14-144                                                                                                      ---- Pfam domains (1)
           Pfam domains (2) ----------Glyoxalase_2-1ss4B02 B:14-144                                                                                                      ---- Pfam domains (2)
         Sec.struct. author ..eeeeeeeeee..hhhhhhhhhhhhh.eeeeeeee..hhhhhhhh....eeeeeeee......eeeeeeeee...............eeeeeeeee.hhhhhhhhhhhh..ee....eee...eeeeeee.hhh.eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ss4 B   4 NKLLRmDNVSIVVESLDNAISFFEEIGLNLEGRANVEGEWAGRVTGLGSQCVEIAmmVTPDGHSRIELSRFLTPPTIADHRTAPVNALGYLRVmFTVEDIDEmVSRLTKHGAELVGEVVQYENSYRLCYIRGVEGILIGLAEELG 148
                                 |  13        23        33        43        53     || 63        73        83        93   |   103  |    113       123       133       143     
                                 9-MSE                                            59-MSE                                97-MSE  106-MSE                                      
                                                                                   60-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (1, 2)

Gene Ontology (0, 0)

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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Thr A:76 - Pro A:77	[ RasMol ]
		Thr B:76 - Pro B:77	[ RasMol ]

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	1ss4
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	Q81F54_BACCR \| Q81F54
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (7, 20)