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(-) Description

Title :  4-HYDROXYPHENYLPYRUVATE DIOXYGENASE
 
Authors :  I. M. Fritze, L. Linden, J. Freigang, G. Auerbach, R. Huber, S. Steinbacher
Date :  16 Mar 04  (Deposition) - 21 Sep 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. M. Fritze, L. Linden, J. Freigang, G. Auerbach, R. Huber, S. Steinbacher
The Crystal Structures Of Zea Mays And Arabidopsis 4-Hydroxyphenylpyruvate Dioxygenase
Plant Physiol. V. 134 1388 2004
PubMed-ID: 15084729  |  Reference-DOI: 10.1104/PP.103.034082
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET14B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: ZEA MAYS
    Organism Taxid: 4577

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1FE24Ligand/IonFE (II) ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1FE22Ligand/IonFE (II) ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1FE22Ligand/IonFE (II) ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:219 , HIS A:301 , GLU A:387 , HOH A:501 , HOH A:502BINDING SITE FOR RESIDUE FE2 A 500
2AC2SOFTWAREHIS B:219 , HIS B:301 , GLU B:387 , HOH B:501 , HOH B:502 , HOH B:503BINDING SITE FOR RESIDUE FE2 B 500
3AC3SOFTWAREHIS C:219 , HIS C:301 , GLU C:387 , HOH C:501 , HOH C:502 , HOH C:503BINDING SITE FOR RESIDUE FE2 C 500
4AC4SOFTWAREHIS D:219 , HIS D:301 , GLU D:387 , HOH D:501 , HOH D:502 , HOH D:503BINDING SITE FOR RESIDUE FE2 D 500

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:394 -A:409
2C:394 -C:409

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1SP8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1SP8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1SP8)

(-) Exons   (0, 0)

(no "Exon" information available for 1SP8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d1sp8a1 A:36-207 4-hydroxyphenylpyruvate dioxygenase, HppD                                                                                                                  d1sp8a2 A:208-431 4-hydroxyphenylpyruvate dioxygenase, HppD                                                                                                                                                              SCOP domains
               CATH domains 1sp8A01 A:36-211 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1                                                                                                                1sp8A02 A:212-431 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1                                                                                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeeeeee..hhhhhhhhhhhhhh..eeeeehhhhh...eeeeeeee..eeeeeeee.....hhhhh.....hhhhhhhhhhhhh.eeeeeeeee.hhhhhhhhhhh....eeeeeeeee..eeeeeeeee..eeeeeee...hhhhh......ee..........eeeeeeeeee..hhhhhhhhhhhhhh.eeeeeee..eeeeeee......eeeeeee.......hhhhhhhhhhh..eeeeeeeee.hhhhhhhhhhhhhhhh........hhhhhhhhhhhhh...hhhhhhhhhhhh.eeee...eeeeeee..........eeeeeeeee...................hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sp8 A  36 RFNPRSDRFHTLAFHHVELWCADAASAAGRFSFGLGAPLAARSDLSTGNSAHASLLLRSGSLSFLFTAPYAHGADAATAALPSFSAAAARRFAADHGLAVRAVALRVADAEDAFRASVAAGARPAFGPVDLGRGFRLAEVELYGDVVLRYVSYPDGAAGEPFLPGFEGVASPGAADYGLSRFDHIVGNVPELAPAAAYFAGFTGFHEFAEFTTGLNSMVLANNSENVLLPLNEPVHGTKRRSQIQTFLDHHGGPGVQHMALASDDVLRTLREMQARSAMGGFEFMAPPTSDYYDGVRRRAGDVLTEAQIKECQELGVLVDRDDQGVLLQIFTKPVGDRPTLFLEIIQRIGCMEKDEKGQEYQKGGCGGFGKGNFSQLFKSIEDYEKSL 431
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245  ||   263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423        
                                                                                                                                                                                                                                              248|                                                                                                                                                                              
                                                                                                                                                                                                                                               257                                                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:392
                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains --d1sp8b1 B:36-207 4-hydroxyphenylpyruvate dioxygenase, HppD                                                                                                                  d1sp8b2 B:208-431 4-hydroxyphenylpyruvate dioxygenase, HppD                                                                                                                                                              - SCOP domains
               CATH domains 1sp8B01 B:34-211 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1                                                                                                                  1sp8B02 B:212-432 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1                                                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeeeeeee..hhhhhhhhhhhhhh..eeeeehhhhh...eeeeeeee..eeeeeeee.....hhhhh.....hhhhhhhhhhhhh.eeeeeeeee.hhhhhhhhhhhh...eeeeeeeee..eeeeeeeee..eeeeeee.hhhhh........ee..........eeeeeeeeee..hhhhhhhhhhhhhh.eeeeee....eeeeeee......eeeeeee.......hhhhhhhhhhh..eeeeeeeee.hhhhhhhhhhhhhh..........hhhhhhhhhhhhh...hhhhhhhhhhhh.eeee...eeeeeee..........eeeeeeeee.eee.....eee.......hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sp8 B  34 FVRFNPRSDRFHTLAFHHVELWCADAASAAGRFSFGLGAPLAARSDLSTGNSAHASLLLRSGSLSFLFTAPYAHGADAATAALPSFSAAAARRFAADHGLAVRAVALRVADAEDAFRASVAAGARPAFGPVDLGRGFRLAEVELYGDVVLRYVSYPDGAAGEPFLPGFEGVASPGAADYGLSRFDHIVGNVPELAPAAAYFAGFTGFHEFAEFTTSGLNSMVLANNSENVLLPLNEPVHGTKRRSQIQTFLDHHGGPGVQHMALASDDVLRTLREMQARSAMGGFEFMAPPTSDYYDGVRRRAGDVLTEAQIKECQELGVLVDRDDQGVLLQIFTKPVGDRPTLFLEIIQRIGCMEKDEKGQEYQKGGCGGFGKGNFSQLFKSIEDYEKSLE 432
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243    || 260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430  
                                                                                                                                                                                                                                                248|                                                                                                                                                                                
                                                                                                                                                                                                                                                 256                                                                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:386
                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains d1sp8c1 C:37-207 4-hydroxyphenylpyruvate dioxygenase, HppD                                                                                                                 d1sp8c2 C:208-431 4-hydroxyphenylpyruvate dioxygenase, HppD                                                                                                                                                             SCOP domains
               CATH domains 1sp8C01 C:37-211 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1                                                                                                               1sp8C02 C:212-431 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1                                                                                                                                                   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeeee..hhhhhhhhhhhhhh..eeeeehhhhh...eeeeeeee..eeeeeeee.....hhhhh.....hhhhhhhhhhhhh.eeeeeeeee.hhhhhhhhhhhh...eeeeeeeee..eeeeeeeee..eeeeeee.hhhhh........ee..........eeeeeeeeee..hhhhhhhhhhhhhh.eeeeee..eeeeeee......eeeeeee.......hhhhhhhhhhh..eeeeeeeee.hhhhhhhhhhhhhhhh........hhhhhhhhhhhhh...hhhhhhhhhhhh.eeeee..eeeeeee..........eeeeeeeee...................hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sp8 C  37 FNPRSDRFHTLAFHHVELWCADAASAAGRFSFGLGAPLAARSDLSTGNSAHASLLLRSGSLSFLFTAPYAHGADAATAALPSFSAAAARRFAADHGLAVRAVALRVADAEDAFRASVAAGARPAFGPVDLGRGFRLAEVELYGDVVLRYVSYPDGAAGEPFLPGFEGVASPGAADYGLSRFDHIVGNVPELAPAAAYFAGFTGFHEFAEFTGLNSMVLANNSENVLLPLNEPVHGTKRRSQIQTFLDHHGGPGVQHMALASDDVLRTLREMQARSAMGGFEFMAPPTSDYYDGVRRRAGDVLTEAQIKECQELGVLVDRDDQGVLLQIFTKPVGDRPTLFLEIIQRIGCMEKDEKGQEYQKGGCGGFGKGNFSQLFKSIEDYEKSL 431
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246||     265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425      
                                                                                                                                                                                                                                            247|                                                                                                                                                                              
                                                                                                                                                                                                                                             257                                                                                                                                                                              


Chain D from PDB  Type:PROTEIN  Length:393
                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --d1sp8d1 D:36-207 4-hydroxyphenylpyruvate dioxygenase, HppD                                                                                                                  d1sp8d2 D:208-431 4-hydroxyphenylpyruvate dioxygenase, HppD                                                                                                                                                               - SCOP domains
               CATH domains 1sp8D01 D:34-211 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1                                                                                                                  1sp8D02 D:212-432 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1                                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeeeeeee..hhhhhhhhhhhhhh..eeeeehhhhh...eeeeeeee..eeeeeeee.....hhhhh.....hhhhhhhhhhhhh.eeeeeeeee.hhhhhhhhhhhh...eeeeeeeee..eeeeeeeee..eeeeeee.hhhhh........ee..........eeeeeeeeee..hhhhhhhhhhhhhh.eeeeee.....eeeeeee......eeeeeee.......hhhhhhhhhhh..eeeeeeeee.hhhhhhhhhhhhhhhh........hhhhhhhhhhhhh...hhhhhhhhhhhh.eeeee..eeeeeee..........eeeeeeeee...................hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sp8 D  34 FVRFNPRSDRFHTLAFHHVELWCADAASAAGRFSFGLGAPLAARSDLSTGNSAHASLLLRSGSLSFLFTAPYAHGADAATAALPSFSAAAARRFAADHGLAVRAVALRVADAEDAFRASVAAGARPAFGPVDLGRGFRLAEVELYGDVVLRYVSYPDGAAGEPFLPGFEGVASPGAADYGLSRFDHIVGNVPELAPAAAYFAGFTGFHEFAEFTTESGLNSMVLANNSENVLLPLNEPVHGTKRRSQIQTFLDHHGGPGVQHMALASDDVLRTLREMQARSAMGGFEFMAPPTSDYYDGVRRRAGDVLTEAQIKECQELGVLVDRDDQGVLLQIFTKPVGDRPTLFLEIIQRIGCMEKDEKGQEYQKGGCGGFGKGNFSQLFKSIEDYEKSLE 432
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243    || 259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429   
                                                                                                                                                                                                                                                248|                                                                                                                                                                                 
                                                                                                                                                                                                                                                 255
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1SP8)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1SP8)

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 Related Entries

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(-) Related Entries Specified in the PDB File

1sp9 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE