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(-) Description

Title :  CRYSTAL STRUCTURE OF A DNA DECAMER CONTAINING A THYMINE-DIMER
 
Authors :  H. Park, K. Zhang, Y. Ren, S. Nadji, N. Sinha, J. -S. Taylor, C. Kang
Date :  08 Mar 04  (Deposition) - 25 May 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Uv-Damaged Dna, Thymine Dimer, Dna Decamer (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Park, K. Zhang, Y. Ren, S. Nadji, N. Sinha, J. -S. Taylor, C. Kang
Crystal Structure Of A Dna Decamer Containing A Thymine-Dimer
Proc. Natl. Acad. Sci. Usa V. 99 15965 2002
PubMed-ID: 12456887  |  Reference-DOI: 10.1073/PNAS.242422699
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*GP*CP*(BRU)P*TP*AP*AP*TP*(BRU)P*CP*G)-3'
    Chains: A, C
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - 5'-D(*CP*GP*AP*AP*TP*TP*AP*AP*GP*C)-3'
    Chains: B, D
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1BRU4Mod. Nucleotide5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1BRU2Mod. Nucleotide5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1BRU2Mod. Nucleotide5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 1SM5)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1SM5)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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Chain A from PDB  Type:DNA  Length:10
                                         
                  1sm5 A  1 GCuTAATuCG 10
                              |    |10
                              |    |  
                              3-BRU|  
                                   8-BRU


Chain B from PDB  Type:DNA  Length:10
                                         
                  1sm5 B  1 CGAATTAAGC 10
                                    10


Chain C from PDB  Type:DNA  Length:10
                                         
                  1sm5 C  1 GCuTAATuCG 10
                              |    |10
                              3-BRU|  
                                   8-BRU


Chain D from PDB  Type:DNA  Length:10
                                         
                  1sm5 D  1 CGAATTAAGC 10
                                    10
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1SM5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1SM5)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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 Related Entries

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