Chain A from PDB Type:PROTEIN Length:262
aligned with TRUB_MYCTO | P9WHP6 from UniProtKB/Swiss-Prot Length:298
Alignment length:290
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 222 232 242 252 262 272 282 292
TRUB_MYCTO 3 ATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRP 292
SCOP domains d1sgva2 A:3-235 Pseudouridine synthase II TruB d1sgva1 A:236-292 SCOP domains
CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeeeee....hhhhhhhhhhhhh....eee........eeeeeeee.hhhhhhhhh....eeeeeeeee.eee........eeee......hhhhhhhhhhhh.eee----------------------------.....eeeeeeeeeeeeee..eeeeeeeeee....hhhhhhhhhhhhh...eeeeeeeeeee..ee.hhh.hhhhhhhh....eehhhhhhhhheeee.hhhhhhhhhh............eeee.....eeeeeeee..eeeeeee... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1sgv A 3 ATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEI----------------------------LEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRP 292
12 22 32 42 52 62 72 82 92 102 112 | - - -| 152 162 172 182 192 202 212 222 232 242 252 262 272 282 292
114 143
Chain A from PDB Type:PROTEIN Length:262
aligned with TRUB_MYCTU | P9WHP7 from UniProtKB/Swiss-Prot Length:298
Alignment length:290
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 222 232 242 252 262 272 282 292
TRUB_MYCTU 3 ATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRP 292
SCOP domains d1sgva2 A:3-235 Pseudouridine synthase II TruB d1sgva1 A:236-292 SCOP domains
CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeeeee....hhhhhhhhhhhhh....eee........eeeeeeee.hhhhhhhhh....eeeeeeeee.eee........eeee......hhhhhhhhhhhh.eee----------------------------.....eeeeeeeeeeeeee..eeeeeeeeee....hhhhhhhhhhhhh...eeeeeeeeeee..ee.hhh.hhhhhhhh....eehhhhhhhhheeee.hhhhhhhhhh............eeee.....eeeeeeee..eeeeeee... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1sgv A 3 ATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEI----------------------------LEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRP 292
12 22 32 42 52 62 72 82 92 102 112 | - - -| 152 162 172 182 192 202 212 222 232 242 252 262 272 282 292
114 143
Chain B from PDB Type:PROTEIN Length:266
aligned with TRUB_MYCTO | P9WHP6 from UniProtKB/Swiss-Prot Length:298
Alignment length:294
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290
TRUB_MYCTO 1 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPAT 294
SCOP domains d1sgvb2 B:1-235 Pseudouridine synthase II TruB d1sgvb1 B:236-294 SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
Pfam domains (1) --------------------------TruB_N-1sgvB03 B:27-179 --------------------------------------------------------TruB_C-1sgvB01 B:236-291 --- Pfam domains (1)
Pfam domains (2) --------------------------TruB_N-1sgvB04 B:27-179 --------------------------------------------------------TruB_C-1sgvB02 B:236-291 --- Pfam domains (2)
Sec.struct. author ......eeeeeee....hhhhhhhhhhhhh....eee........eeeeeeee.hhhhhhhhhh...eeeeeeeee.eee........eeee......hhhhhhhhhhhhh----------------------------..........eeeeeeeeeeee..eeeeeeeeee....hhhhhhhhhhhhh...eeeeeeeeeee..ee.hhh.hhhhhhhh....eehhhhhhhhheeee.hhhhhhhhhh............eeee.....eeeeeeee..eeeeeee..... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1sgv B 1 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLR----------------------------SVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPAT 294
10 20 30 40 50 60 70 80 90 100 110| - - 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290
111 140
Chain B from PDB Type:PROTEIN Length:266
aligned with TRUB_MYCTU | P9WHP7 from UniProtKB/Swiss-Prot Length:298
Alignment length:294
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290
TRUB_MYCTU 1 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPAT 294
SCOP domains d1sgvb2 B:1-235 Pseudouridine synthase II TruB d1sgvb1 B:236-294 SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
Pfam domains (1) --------------------------TruB_N-1sgvB03 B:27-179 --------------------------------------------------------TruB_C-1sgvB01 B:236-291 --- Pfam domains (1)
Pfam domains (2) --------------------------TruB_N-1sgvB04 B:27-179 --------------------------------------------------------TruB_C-1sgvB02 B:236-291 --- Pfam domains (2)
Sec.struct. author ......eeeeeee....hhhhhhhhhhhhh....eee........eeeeeeee.hhhhhhhhhh...eeeeeeeee.eee........eeee......hhhhhhhhhhhhh----------------------------..........eeeeeeeeeeee..eeeeeeeeee....hhhhhhhhhhhhh...eeeeeeeeeee..ee.hhh.hhhhhhhh....eehhhhhhhhheeee.hhhhhhhhhh............eeee.....eeeeeeee..eeeeeee..... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1sgv B 1 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLR----------------------------SVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPAT 294
10 20 30 40 50 60 70 80 90 100 110| - - 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290
111 140
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |