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(-) Description

Title :  1.07 A CRYSTAL STRUCTURE OF AN UNCHARACTERIZED B. STEAROTHERMOPHILUS PROTEIN
 
Authors :  G. Minasov, J. S. Brunzelle, L. Shuvalova, S. F. Moy, F. R. Collart, W. F. Anderson, Midwest Center For Structural Genomics (Mcsg)
Date :  20 Feb 04  (Deposition) - 02 Mar 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.07
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Unknown Function, Possible Bacterial Lysozyme, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Minasov, J. S. Brunzelle, L. Shuvalova, S. F. Moy, F. R. Collart, W. F. Anderson
1. 07 A Crystal Structure Of An Uncharacterized B. Stearothermophilus Protein
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21-DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RBSTP1166
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1PO41Ligand/IonPHOSPHATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:30 , ASP A:110 , ALA A:111 , GLU A:145 , HOH A:218 , HOH A:228 , HOH A:345 , HOH A:353 , HOH A:378 , HOH A:398 , HOH A:440 , HOH A:531BINDING SITE FOR RESIDUE PO4 A 217

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:21 -A:200
2A:144 -A:184

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:163 -Pro A:164

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1SFS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1SFS)

(-) Exons   (0, 0)

(no "Exon" information available for 1SFS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:213
 aligned with P84136_GEOSE | P84136 from UniProtKB/TrEMBL  Length:240

    Alignment length:213
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237   
         P84136_GEOSE    28 GIWGVDSAQVVTDQLFQCVRTELGYPKFWGRYLSEVPNVSEGLTRDEIVRIRNYGVKVLPIYNAFREAVGYANGQVAARNAVFHARRLGIPKNKLLFANIEDFFAVDAAWIAAWVETLYPTGYRPGLYADPTKGDFAAAYCEAVSRNNQVAVQAVIWSAAPRPGTTKEQKAPRYQPAAPPCSANVWVWQYGRDAEVCPVDTNLADRRLLDFLY 240
               SCOP domains d1sfsa_ A: Unnamed hypothetical protein                                                                                                                                                                               SCOP domains
               CATH domains 1sfsA00 A:4-216 Glycosidases                                                                                                                                                                                          CATH domains
               Pfam domains ------DUF1906-1sfsA01 A:10-132                                                                                                   ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee.....hhhhhhhhhhhh....eeeee...........hhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhhhhhhhh......eeeee.......hhhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhhhhhhhhheeee........hhhhh............eeeeeeee........eeeee.hhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sfs A   4 GIWGVDSAQVVTDQLFQCVRTELGYPKFWGRYLSEVPNVSEGLTRDEIVRIRNYGVKVLPIYNAFREAVGYANGQVAARNAVFHARRLGIPKNKLLFANIEDFFAVDAAWIAAWVETLYPTGYRPGLYADPTKGDFAAAYCEAVSRNNQVAVQAVIWSAAPRPGTTKEQKAPRYQPAAPPCSANVWVWQYGRDAEVCPVDTNLADRRLLDFLY 216
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: DUF1906] (1)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (P84136_GEOSE | P84136)
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

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