1SE4 - JenaLib

Title :   STAPHYLOCOCCAL ENTEROTOXIN B COMPLEXED WITH LACTOSE

Authors :   S. Swaminathan, M. Sax

Date :   16 Apr 97 (Deposition) - 15 Oct 97 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym./Biol. Unit : A

Keywords :   Toxin, Superantigen, Seb, 3D Structure, Lactose, Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Swaminathan, W. Furey, J. Pletcher, M. Sax
Residues Defining V Beta Specificity In Staphylococcal Enterotoxins.
Nat. Struct. Biol. V. 2 680 1995
PubMed-ID: 7552730 | Reference-DOI: 10.1038/NSB0895-680
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (2, 2)

SS Bonds (1, 1)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 2)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:239
 aligned with ETXB_STAAU | P01552 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:239
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257         
           ETXB_STAAU    28 ESQPDPKPDELHKSSKFTGLMENMKVLYDDNHVSAINVKSIDQFLYFDLIYSIKDTKLGNYDNVRVEFKNKDLADKYKDKYVDVFGANYYYQCYFSKKTNDINSHQTDKRKTCMYGGVTEHNGNQLDKYRSITVRVFEDGKNLLSFDVQTNKKKVTAQELDYLTRHYLVKNKKLYEFNNSPYETGYIKFIENENSFWYDMMPAPGDKFDQSKYLMMYNDNKMVDSKDVKIEVYLTTKKK 266
               SCOP domains d1se4a1 A:1-121 Staphylococcal enterotoxin B, SEB                                                                        d1se4a2 A:122-239 Staphylococcal enterotoxin B, SEB                                                                    SCOP domains
               CATH domains -1se4A02 A:2-31,A:128-231      1se4A01 A:32-121  [code=2.40.50.110, no name defined]                                     ------1se4A02 A:2-31,A:128-231  [code=3.10.20.120, no name defined]                                           -------- CATH domains
               Pfam domains ----------------------Stap_Strp_toxin-1se4A02 A:23-121                                                                   --------Stap_Strp_tox_C-1se4A01 A:130-235                                                                         ---- Pfam domains
         Sec.struct. author ............hhhhh...hhhhhhhhh...eeeeeee........eeeee..........eeeeee.hhhhhhhhh..eeeeeeeee......................eeeeeeeee......eeeeeeeeeeee..eeeeeeeeeee..eeehhhhhhhhhhhhhhhh.........eeeeeeeee....eeeeee.........hhhhhhhh....eee....eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------STAPH_STRE---------------------------STAPH_STREP_TOXIN_2     ---------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1se4 A   1 ESQPDPKPDELHKSSKFTGLMENMKVLYDDNHVSAINVKSIDQFLYFDLIYSIKDTKLGNYDNVRVEFKNKDLADKYKDKYVDVFGANYYYQCYFSKKTNDINSHQTDKRKTCMYGGVTEHNGNQLDKYRSITVRVFEDGKNLLSFDVQTNKKKVTAQELDYLTRHYLVKNKKLYEFNNSPYETGYIKFIENENSFWYDMMPAPGDKFDQSKYLMMYNDNKMVDSKDVKIEVYLTTKKK 239
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 2)

CATH Domains (2, 2)

Pfam Domains (2, 2)

Gene Ontology (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (ETXB_STAAU | P01552)

biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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